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(-) Description

Title :  GTPASE DOMAIN OF SEPTIN 10 FROM SCHISTOSOMA MANSONI IN COMPLEX WITH GDP
 
Authors :  A. E. Zeraik, H. M. Pereira, Y. V. Santos, J. Brandao-Neto, R. C. Garratt A. P. U. Araujo, R. Demarco
Date :  22 May 13  (Deposition) - 05 Feb 14  (Release) - 02 Apr 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.93
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Small Gtpase, Cytoskeleton Component, Septins, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. E. Zeraik, H. M. Pereira, Y. V. Santos, J. Brandao-Neto, M. Spoerner M. S. Santos, L. A. Colnago, R. C. Garratt, A. P. Araujo, R. Demarco
Crystal Structure Of A Schistosoma Mansoni Septin Reveals The Phenomenon Of Strand Slippage In Septins Dependent On The Nature Of The Bound Nucleotide.
J. Biol. Chem. V. 289 7799 2014
PubMed-ID: 24464615  |  Reference-DOI: 10.1074/JBC.M113.525352

(-) Compounds

Molecule 1 - SEPTIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: SEPTIN 10, SMP_029890
    Organism Common: BLOOD FLUKE
    Organism Scientific: SCHISTOSOMA MANSONI
    Organism Taxid: 6183

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1GDP2Ligand/IonGUANOSINE-5'-DIPHOSPHATE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:51 , ILE A:52 , GLY A:53 , LYS A:54 , SER A:55 , THR A:56 , LYS A:184 , ASP A:186 , VAL A:237 , GLY A:238 , ARG A:253 , TYR A:255 , HOH A:612 , HOH A:616 , HOH A:654 , THR B:157 , THR B:187 , GLU B:192 , HOH B:645BINDING SITE FOR RESIDUE GDP A 500
2AC2SOFTWARETHR A:157 , THR A:187 , GLU A:192 , HOH A:642 , GLY B:51 , ILE B:52 , GLY B:53 , LYS B:54 , SER B:55 , THR B:56 , LYS B:184 , ASP B:186 , VAL B:237 , GLY B:238 , ARG B:253 , TYR B:255 , HOH B:614 , HOH B:621 , HOH B:655BINDING SITE FOR RESIDUE GDP B 500

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4KV9)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Ile A:232 -Pro A:233
2Ala B:220 -Val B:221
3Ile B:232 -Pro B:233

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4KV9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4KV9)

(-) Exons   (0, 0)

(no "Exon" information available for 4KV9)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:246
                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeeee...hhhhhhhhhhh......eeeeeeee....eeeeeeeeee....hhhhhhhhhhhhhhhhhhhhh..............eeeeee.......hhhhhhhhhhhh....eeeee.hhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhh.ee.....eee...eeeeee..eeee.......hhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4kv9 A  40 FVFNILCVGETGIGKSTLLETLFNQKFDFKLKAVTYDLKEANVKLKLTVVETCENNIKPVVDYIDNQFENYLQEELKMKRSMQAFHDTRVHVCLYFIAPTGHSLKSIDLVAMKKLENKVNVIPVIAKSDTITKSELQKFKARILSEIQSNEIGIYQFPTDDEAVSETNSVMNQHIPFAVVGSSEEVKITVRVRQYPWGSVQVENENHCDFVRLREMLLRVNMEDLRERTHGVHYETYRRQRLIEMG 306
                                    49        59        79        89        99  ||   117       127       137       147       157       167       177       187       197       207       217       227       237       250       260       270       280       290       300      
                                                       68|                    102|                                                                                                                                   245|                                                         
                                                        79                     111                                                                                                                                    249                                                         


Chain B from PDB  Type:PROTEIN  Length:253
                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee...hhhhhhhhhhh........eeeeeeee....eeeeeeeeee......hhhhhhhhhhhhhhhhhhhhh..............eeeeee.......hhhhhhhhhhhh....eeeee.hhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhh.ee......eeee..eeeeeeee..eeee.......hhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4kv9 B  40 FVFNILCVGETGIGKSTLLETLFNQKFDFSPKLKAVTYDLKEANVKLKLTVVETCNKENNIKPVVDYIDNQFENYLQEELKMKRSMQAFHDTRVHVCLYFIAPTGHSLKSIDLVAMKKLENKVNVIPVIAKSDTITKSELQKFKARILSEIQSNEIGIYQFPTDDEAVSETNSVMNQHIPFAVVGSSEEVKINGKTVRVRQYPWGSVQVENENHCDFVRLREMLLRVNMEDLRERTHGVHYETYRRQRLIEMG 306
                                    49        59        69||      87        97    || 113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303   
                                                         70|                    102|                                                                                                                                                                                                     
                                                          79                     109
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4KV9)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4KV9)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4KV9)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        G4VFI8_SCHMA | G4VFI8: 4kva

(-) Related Entries Specified in the PDB File

4kva GTPASE DOMAIN OF SEPTIN 10 FROM SCHISTOSOMA MANSONI IN COMPLEX WITH GTP