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(-) Description

Title :  NANOBODY/VHH DOMAIN EGA1
 
Authors :  K. M. Ferguson, K. R. Schmitz
Date :  16 May 13  (Deposition) - 28 Aug 13  (Release) - 28 Aug 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.55
Chains :  Asym./Biol. Unit :  A
Keywords :  Nanobody, Vhh Domain, Camelid Vh Domain, Antibody, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. R. Schmitz, A. Bagchi, R. C. Roovers, P. M. Van Bergen En Henegouwen, K. M. Ferguson
Structural Evaluation Of Egfr Inhibition Mechanisms For Nanobodies/Vhh Domains.
Structure V. 21 1214 2013
PubMed-ID: 23791944  |  Reference-DOI: 10.1016/J.STR.2013.05.008

(-) Compounds

Molecule 1 - NANOBODY/VHH DOMAIN EGA1
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET22B
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Common: LLAMA
    Organism Scientific: LAMA GLAMA
    Organism Taxid: 9844

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:30 , SER A:31 , GLN A:39 , GLN A:44 , ARG A:45 , SER A:54 , ARG A:107 , HOH A:312 , HOH A:330 , HOH A:363BINDING SITE FOR RESIDUE SO4 A 201

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:22 -A:96

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4KRN)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4KRN)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4KRN)

(-) Exons   (0, 0)

(no "Exon" information available for 4KRN)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:126
                                                                                                                                                              
               SCOP domains d4krna_ A: automated matches                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee..eee.....eeeeeeeee.....eeeeeeee......eeeeeee.....eee.......eeeee..eeeeee...hhhhheeeeeeeee............hhhhh.ee...eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4krn A   1 QVQLQESGGGLVQPGGSLRLSCAASGRTFSSYAMGWFRQAPGKQREFVAAIRWSGGYTYYTDSVKGRFTISRDTTVYLQMNSLKPEDTAVYYCAATYLSSDYSRYALPQRPLDYDYWGQGTQVTVS 129
                                    10        20        30        40        50        60        70  ||    83        93       103       113       123      
                                                                                                   73|                                                    
                                                                                                    77
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 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4KRN)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4KRN)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4KRN)

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  4krn
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 4KRN)

(-) Related Entries Specified in the PDB File

4krl 4krm 4kro 4krp