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(-) Description

Title :  NANOBODY/VHH DOMAIN 7D12 IN COMPLEX WITH DOMAIN III OF THE EXTRACELLULAR REGION OF EGFR, PH 3.5
 
Authors :  K. M. Ferguson, K. R. Schmitz
Date :  16 May 13  (Deposition) - 28 Aug 13  (Release) - 28 Aug 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.65
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Biol. Unit 4:  G,H  (1x)
Biol. Unit 5:  I,J  (1x)
Biol. Unit 6:  K,L  (1x)
Keywords :  Cell Surface Receptor, Glycoprotein, Nanobody, Vhh Domain, Camelid Vh Domain, Antibody, Antigen, Antibody Complex, Transferase-Immune System Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. R. Schmitz, A. Bagchi, R. C. Roovers, P. M. P. Van Bergen En Henegouwen, K. M. Ferguson
Structural Evaluation Of Egfr Inhibition Mechanisms For Nanobodies/Vhh Domains.
Structure V. 21 1214 2013
PubMed-ID: 23791944  |  Reference-DOI: 10.1016/J.STR.2013.05.008

(-) Compounds

Molecule 1 - EPIDERMAL GROWTH FACTOR RECEPTOR
    Chains: A, C, E, G, I, K
    EC Number: 2.7.10.1
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Common: FALL ARMYWORM
    Expression System Plasmid: PFASTBAC
    Expression System Strain: SF9
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Fragment: EXTRACELLULAR REGION DOMAIN III (UNP RESIDUES 335-538)
    Gene: EGFR, ERBB, ERBB1, HER1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: PROTO-ONCOGENE C-ERBB-1, RECEPTOR TYROSINE-PROTEIN KINASE ERBB-1
 
Molecule 2 - NANOBODY/VHH DOMAIN 7D12
    Chains: B, D, F, H, J, L
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Common: LLAMA
    Organism Scientific: LAMA GLAMA
    Organism Taxid: 9844

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric Unit : ABCDEFGHIJKL
Biological Unit 1 (1x): AB          
Biological Unit 2 (1x):   CD        
Biological Unit 3 (1x):     EF      
Biological Unit 4 (1x):       GH    
Biological Unit 5 (1x):         IJ  
Biological Unit 6 (1x):           KL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 37)

Asymmetric Unit (3, 37)
No.NameCountTypeFull Name
1BMA6Ligand/IonBETA-D-MANNOSE
2MAN6Ligand/IonALPHA-D-MANNOSE
3NAG25Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 1 (3, 6)
No.NameCountTypeFull Name
1BMA1Ligand/IonBETA-D-MANNOSE
2MAN1Ligand/IonALPHA-D-MANNOSE
3NAG4Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 2 (3, 7)
No.NameCountTypeFull Name
1BMA1Ligand/IonBETA-D-MANNOSE
2MAN1Ligand/IonALPHA-D-MANNOSE
3NAG5Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 3 (3, 6)
No.NameCountTypeFull Name
1BMA1Ligand/IonBETA-D-MANNOSE
2MAN1Ligand/IonALPHA-D-MANNOSE
3NAG4Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 4 (3, 6)
No.NameCountTypeFull Name
1BMA1Ligand/IonBETA-D-MANNOSE
2MAN1Ligand/IonALPHA-D-MANNOSE
3NAG4Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 5 (3, 6)
No.NameCountTypeFull Name
1BMA1Ligand/IonBETA-D-MANNOSE
2MAN1Ligand/IonALPHA-D-MANNOSE
3NAG4Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 6 (3, 6)
No.NameCountTypeFull Name
1BMA1Ligand/IonBETA-D-MANNOSE
2MAN1Ligand/IonALPHA-D-MANNOSE
3NAG4Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (18, 18)

Asymmetric Unit (18, 18)
No.NameEvidenceResiduesDescription
01AC1SOFTWARESER A:324 , LEU A:325 , SER A:326 , ASN A:328 , ASN A:331 , THR A:358 , THR A:360BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 328 RESIDUES 601 TO 604
02AC2SOFTWARELYS A:336 , ASN A:337BINDING SITE FOR MONO-SACCHARIDE NAG A 605 BOUND TO ASN A 337
03AC3SOFTWARETRP A:386 , GLU A:388 , ASN A:420 , TYR B:109BINDING SITE FOR MONO-SACCHARIDE NAG A 606 BOUND TO ASN A 420
04AC4SOFTWAREGLU C:320 , SER C:324 , LEU C:325 , SER C:326 , ASN C:328 , THR C:330 , ASN C:331 , THR C:358 , THR C:360 , MAN I:604BINDING SITE FOR CHAIN C OF SUGAR BOUND TO ASN C 328 RESIDUES 601 TO 604
05AC5SOFTWAREASN C:337BINDING SITE FOR MONO-SACCHARIDE NAG C 605 BOUND TO ASN C 337
06AC6SOFTWARETRP C:386 , GLU C:388 , ASN C:420 , THR D:107 , TYR D:109BINDING SITE FOR CHAIN C OF SUGAR BOUND TO ASN C 420 RESIDUES 606 TO 607
07AC7SOFTWAREASP E:323 , SER E:324 , LEU E:325 , SER E:326 , ASN E:328 , ASN E:331 , ASP E:355 , THR E:358 , THR E:360BINDING SITE FOR CHAIN E OF SUGAR BOUND TO ASN E 328 RESIDUES 601 TO 604
08AC8SOFTWAREASN E:337BINDING SITE FOR MONO-SACCHARIDE NAG E 605 BOUND TO ASN E 337
09AC9SOFTWARETRP E:386 , ASN E:420 , LYS E:443 , TYR F:109BINDING SITE FOR MONO-SACCHARIDE NAG E 606 BOUND TO ASN E 420
10BC1SOFTWAREPHE G:321 , ASP G:323 , SER G:324 , LEU G:325 , SER G:326 , ASN G:328 , ASN G:331 , ASP G:355 , THR G:358 , THR G:360 , ARG H:27BINDING SITE FOR CHAIN G OF SUGAR BOUND TO ASN G 328 RESIDUES 601 TO 604
11BC2SOFTWAREASN G:337BINDING SITE FOR MONO-SACCHARIDE NAG G 605 BOUND TO ASN G 337
12BC3SOFTWARETRP G:386 , GLU G:388 , ASN G:420 , TYR H:109BINDING SITE FOR MONO-SACCHARIDE NAG G 606 BOUND TO ASN G 420
13BC4SOFTWAREMAN C:604 , GLU I:320 , ASP I:323 , SER I:324 , LEU I:325 , SER I:326 , ASN I:328 , THR I:330 , ASN I:331 , THR I:358 , THR I:360BINDING SITE FOR CHAIN I OF SUGAR BOUND TO ASN I 328 RESIDUES 601 TO 604
14BC5SOFTWAREASN I:337BINDING SITE FOR MONO-SACCHARIDE NAG I 605 BOUND TO ASN I 337
15BC6SOFTWARETRP I:386 , GLU I:388 , ASN I:420BINDING SITE FOR MONO-SACCHARIDE NAG I 606 BOUND TO ASN I 420
16BC7SOFTWAREASP K:323 , SER K:324 , LEU K:325 , SER K:326 , ASN K:328 , THR K:330 , ASN K:331 , ASP K:355 , THR K:358 , THR K:360 , HOH K:705BINDING SITE FOR CHAIN K OF SUGAR BOUND TO ASN K 328 RESIDUES 601 TO 604
17BC8SOFTWARELYS K:336 , ASN K:337BINDING SITE FOR MONO-SACCHARIDE NAG K 605 BOUND TO ASN K 337
18BC9SOFTWARETRP K:386 , GLU K:388 , ASN K:420BINDING SITE FOR MONO-SACCHARIDE NAG K 606 BOUND TO ASN K 420

(-) SS Bonds  (31, 31)

Asymmetric Unit
No.Residues
1A:313 -A:338
2A:446 -A:475
3A:482 -A:491
4A:486 -A:499
5B:22 -B:96
6C:313 -C:338
7C:446 -C:475
8C:482 -C:491
9C:486 -C:499
10D:22 -D:96
11E:313 -E:338
12E:446 -E:475
13E:482 -E:491
14E:486 -E:499
15F:22 -F:96
16G:313 -G:338
17G:446 -G:475
18G:482 -G:491
19G:486 -G:499
20G:502 -G:511
21H:22 -H:96
22I:313 -I:338
23I:446 -I:475
24I:482 -I:491
25I:486 -I:499
26J:22 -J:96
27K:313 -K:338
28K:446 -K:475
29K:482 -K:491
30K:486 -K:499
31L:22 -L:96

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4KRM)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4KRM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4KRM)

(-) Exons   (0, 0)

(no "Exon" information available for 4KRM)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:197
                                                                                                                                                                                                                                     
               SCOP domains d4krma1 A:307-480 automated matches                                                                                                                                           d4krma2 A:481-503       SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eee...hhhhh........hhhhhh...eee..eeehhhhhhhhhhhh....hhhhhhhhhhh.ee...eee.........hhhhh...ee....hhhh.eeeeee.............ee...eeeee......hhhhhhhhhh.......eeee...hhhhhhhh................hhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4krm A 307 LEEKKVCNGIGIGEFKDSLSINATNIKHFKNCTSISGDLHILPVAFRGDSFTHTPPLDPQELDILKTVKEITGFLLIQAWPENRTDLHAFENLEIIRGRTKQHGQFSLAVVSLNITSLGLRSLKEISDGDVIISGNKNLCYANTINWKKLFGTSGQKTKIISNRGENSCKATGQVCHALCSPEGCWGPEPRDCVSCR 503
                                   316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       


Chain B from PDB  Type:PROTEIN  Length:124
                                                                                                                                                            
               SCOP domains d4krmb_ B: automated matches                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee..eeee....eeeeeeeee.....eeeeeeee......eeeeee.....eeee.hhhh..eeeeee....eeeeee...hhhhheeeeeeeee......hhhhh.ee...eeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                 4krm B   1 QVKLEESGGGSVQTGGSLRLTCAASGRTSRSYGMGWFRQAPGKEREFVSGISWRGDSTGYADSVKGRFTISRDNAKNTVDLQMNSLKPEDTAIYYCAAAAGSAWYGTLYEYDYWGQGTQVTVSS 124
                                    10        20        30        40        50        60        70        80        90       100       110       120    


Chain C from PDB  Type:PROTEIN  Length:197
                                                                                                                                                                                                                                     
               SCOP domains d4krmc1 C:307-480 automated matches                                                                                                                                           d4krmc2 C:481-503       SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee...hhhhh.......hhhhhhh...eee..eee.hhhhhhhhhhh....hhhhhhhhhhh.ee...eee.........hhhhh...ee....hhhh.eeeeee.............ee...eeeee......hhhhhhhhhh.......eeee...hhhhhhhh................hhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4krm C 307 LEEKKVCNGIGIGEFKDSLSINATNIKHFKNCTSISGDLHILPVAFRGDSFTHTPPLDPQELDILKTVKEITGFLLIQAWPENRTDLHAFENLEIIRGRTKQHGQFSLAVVSLNITSLGLRSLKEISDGDVIISGNKNLCYANTINWKKLFGTSGQKTKIISNRGENSCKATGQVCHALCSPEGCWGPEPRDCVSCR 503
                                   316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       


Chain D from PDB  Type:PROTEIN  Length:124
                                                                                                                                                            
               SCOP domains d4krmd_ D: automated matches                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee..eeee....eeeeeeeee.....eeeeeeee......eeeeee.....eeee.......eeeeee....eeeeee...hhhhheeeeeeeee......hhhhh.ee...eeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                 4krm D   1 QVKLEESGGGSVQTGGSLRLTCAASGRTSRSYGMGWFRQAPGKEREFVSGISWRGDSTGYADSVKGRFTISRDNAKNTVDLQMNSLKPEDTAIYYCAAAAGSAWYGTLYEYDYWGQGTQVTVSS 124
                                    10        20        30        40        50        60        70        80        90       100       110       120    


Chain E from PDB  Type:PROTEIN  Length:197
                                                                                                                                                                                                                                     
               SCOP domains d4krme1 E:307-480 automated matches                                                                                                                                           d4krme2 E:481-503       SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee...hhhhh........hhhhhh...eee..eeehhhhhhhhhhhh....hhhhhhhhhhh.ee...eee.........hhhhh...ee....hhhh.eeeeee.............ee...eeeee...........hhhhh.......eeee...hhhhhhhh................hhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4krm E 307 LEEKKVCNGIGIGEFKDSLSINATNIKHFKNCTSISGDLHILPVAFRGDSFTHTPPLDPQELDILKTVKEITGFLLIQAWPENRTDLHAFENLEIIRGRTKQHGQFSLAVVSLNITSLGLRSLKEISDGDVIISGNKNLCYANTINWKKLFGTSGQKTKIISNRGENSCKATGQVCHALCSPEGCWGPEPRDCVSCR 503
                                   316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       


Chain F from PDB  Type:PROTEIN  Length:122
                                                                                                                                                          
               SCOP domains d4krmf_ F: automated matches                                                                                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee..........eeeeeeeee.....eeeeeeee.....eeeeeee......eee.hhhh..eeeeee....eeeeee...hhhhheeeeeeeee......hhhhh.ee...eee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------- Transcript
                 4krm F   1 QVKLEESGGGSVQTGGSLRLTCAASGRTSRSYGMGWFRQAPGKEREFVSGISWRGDSTGYADSVKGRFTISRDNAKNTVDLQMNSLKPEDTAIYYCAAAAGSAWYGTLYEYDYWGQGTQVTV 122
                                    10        20        30        40        50        60        70        80        90       100       110       120  


Chain G from PDB  Type:PROTEIN  Length:198
                                                                                                                                                                                                                                      
               SCOP domains d4krmg1 G:307-480 automated matches                                                                                                                                           ------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeee...hhhhh........hhhhhh...eee..eeehhhhhhhhhhhh....hhhhhhhhhhh.ee...eee.........hhhhh...ee....hhhh.eeeeee.............ee...eeeee...........hhhhh.......eeee...hhhhhhh.................hhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4krm G 307 LEEKKVCNGIGIGEFKDSLSINATNIKHFKNCTSISGDLHILPVAFRGDSFTHTPPLDPQELDILKTVKEITGFLLIQAWPENRTDLHAFENLEIIRGRTKQHGQFSLAVVSLNITSLGLRSLKEISDGDVIISGNKNLCYANTINWKKLFGTSGQKTKIISNRGENSCKATGQVCHALCSPEGCWGPEPRDCVSCRC 511
                                   316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496      ||
                                                                                                                                                                                                                              503|
                                                                                                                                                                                                                               511


Chain H from PDB  Type:PROTEIN  Length:124
                                                                                                                                                            
               SCOP domains d4krmh_ H: automated matches                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee..eeee....eeeeeeeee.....eeeeeeee......eeeeee......eee.hhhh..eeeeee....eeeeee...hhhhheeeeeeeee......hhhhh.ee...eeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                 4krm H   1 QVKLEESGGGSVQTGGSLRLTCAASGRTSRSYGMGWFRQAPGKEREFVSGISWRGDSTGYADSVKGRFTISRDNAKNTVDLQMNSLKPEDTAIYYCAAAAGSAWYGTLYEYDYWGQGTQVTVSS 124
                                    10        20        30        40        50        60        70        80        90       100       110       120    


Chain I from PDB  Type:PROTEIN  Length:195
                                                                                                                                                                                                                                   
               SCOP domains d4krmi1 I:307-480 automated matches                                                                                                                                           d4krmi2 I:481-501     SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee...hhhhh........hhhhhh...eee..eeehhhhhhhhhhhh....hhhhhhhhhhh.ee...eee.........hhhhh...ee....hhhh.eeeeee.............ee...eeeee...........hhhhh.......eeee...hhhhhhh.................hhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4krm I 307 LEEKKVCNGIGIGEFKDSLSINATNIKHFKNCTSISGDLHILPVAFRGDSFTHTPPLDPQELDILKTVKEITGFLLIQAWPENRTDLHAFENLEIIRGRTKQHGQFSLAVVSLNITSLGLRSLKEISDGDVIISGNKNLCYANTINWKKLFGTSGQKTKIISNRGENSCKATGQVCHALCSPEGCWGPEPRDCVS 501
                                   316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496     


Chain J from PDB  Type:PROTEIN  Length:124
                                                                                                                                                            
               SCOP domains d4krmj_ J: automated matches                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee..eeee....eeeeeeeee.....eeeeeeee......eeeeee.....eeee.......eeeeee....eeeeee...hhhhheeeeeeeee......hhhhh.ee...eeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                 4krm J   1 QVKLEESGGGSVQTGGSLRLTCAASGRTSRSYGMGWFRQAPGKEREFVSGISWRGDSTGYADSVKGRFTISRDNAKNTVDLQMNSLKPEDTAIYYCAAAAGSAWYGTLYEYDYWGQGTQVTVSS 124
                                    10        20        30        40        50        60        70        80        90       100       110       120    


Chain K from PDB  Type:PROTEIN  Length:196
                                                                                                                                                                                                                                    
               SCOP domains d4krmk1 K:307-480 automated matches                                                                                                                                           d4krmk2 K:481-502      SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eee...hhhhh........hhhhhh...eee..eee.hhhhhhhhhhh....hhhhhhhhhhh.ee...eee.........hhhhh...ee....hhhh.eeeeee.............ee...eeeee......hhhhhhhhhh.......eeee...hhhhhhh.................hhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4krm K 307 LEEKKVCNGIGIGEFKDSLSINATNIKHFKNCTSISGDLHILPVAFRGDSFTHTPPLDPQELDILKTVKEITGFLLIQAWPENRTDLHAFENLEIIRGRTKQHGQFSLAVVSLNITSLGLRSLKEISDGDVIISGNKNLCYANTINWKKLFGTSGQKTKIISNRGENSCKATGQVCHALCSPEGCWGPEPRDCVSC 502
                                   316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496      


Chain L from PDB  Type:PROTEIN  Length:124
                                                                                                                                                            
               SCOP domains d4krml_ L: automated matches                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee..eeee....eeeeeeeee.....eeeeeeee......eeeeee.....eeee.hhhh..eeeeee....eeeeee...hhhhheeeeeeeee......hhhhh.ee...eeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                 4krm L   1 QVKLEESGGGSVQTGGSLRLTCAASGRTSRSYGMGWFRQAPGKEREFVSGISWRGDSTGYADSVKGRFTISRDNAKNTVDLQMNSLKPEDTAIYYCAAAAGSAWYGTLYEYDYWGQGTQVTVSS 124
                                    10        20        30        40        50        60        70        80        90       100       110       120
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (3, 17)

Asymmetric Unit
(-)
Class: All beta proteins (24004)
(-)
Class: Alpha and beta proteins (a/b) (23833)
(-)
Class: Small proteins (3458)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4KRM)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4KRM)

(-) Gene Ontology  (111, 111)

Asymmetric Unit(hide GO term definitions)

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Asymmetric Unit
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  4krm
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  EGFR_HUMAN | P00533
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  2.7.10.1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        EGFR_HUMAN | P00533: 1dnq 1dnr 1ivo 1m14 1m17 1mox 1nql 1xkk 1yy9 1z9i 2eb2 2eb3 2exp 2exq 2gs2 2gs6 2gs7 2itn 2ito 2itp 2itq 2itt 2itu 2itv 2itw 2itx 2ity 2itz 2j5e 2j5f 2j6m 2jit 2jiu 2jiv 2ks1 2m0b 2m20 2n5s 2rf9 2rfd 2rfe 2rgp 3b2u 3b2v 3bel 3buo 3c09 3g5v 3g5y 3gop 3gt8 3ika 3lzb 3njp 3ob2 3op0 3p0y 3pfv 3poz 3qwq 3ug1 3ug2 3vjn 3vjo 3vrp 3vrr 3w2o 3w2p 3w2q 3w2r 3w2s 3w32 3w33 4g5j 4g5p 4hjo 4i1z 4i20 4i21 4i22 4i23 4i24 4jq7 4jq8 4jr3 4jrv 4krl 4kro 4krp 4li5 4ll0 4lqm 4lrm 4r3p 4r3r 4r5s 4riw 4rix 4riy 4rj4 4rj5 4rj6 4rj7 4rj8 4tks 4uip 4uv7 4wd5 4wkq 4wrg 4zau 4zjv 4zse 5c8k 5c8m 5c8n 5cal 5can 5cao 5cap 5caq 5cas 5cau 5cav 5cnn 5cno 5czh 5czi 5d41 5edp 5edq 5edr 5em5 5em6 5em7 5em8 5fed 5fee 5feq 5gmp 5gnk 5hcx 5hcy 5hcz 5hg5 5hg7 5hg8 5hg9 5hib 5hic 5j9y 5j9z 5jeb 5lv6 5sx4 5sx5 5u8l 5ug8 5ug9 5uga 5ugb 5ugc

(-) Related Entries Specified in the PDB File

4krl 4krn 4kro 4krp