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(-) Description

Title :  HAEMONCHUS CONTORTUS PHOSPHOLETHANOLAMINE N-METHYLTRANSFERASE 2 IN COMPLEX WITH PHOSPHOMONOMETHYLETHANOLAMINE AND S-ADENOSYLHOMOCYSTEINE
 
Authors :  S. G. Lee, J. M. Jez
Date :  16 May 13  (Deposition) - 25 Sep 13  (Release) - 30 Oct 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.72
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Keywords :  Methyltransferase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. G. Lee, J. M. Jez
Evolution Of Structure And Mechanistic Divergence In Di-Domain Methyltransferases From Nematode Phosphocholine Biosynthesis.
Structure V. 21 1778 2013
PubMed-ID: 24012478  |  Reference-DOI: 10.1016/J.STR.2013.07.023

(-) Compounds

Molecule 1 - PHOSPHOLETHANOLAMINE N-METHYLTRANSFERASE 2
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-28A-HCPMT2
    Expression System Strain: ROSETTA II (DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: HAEMONCHUS CONTORTUS
    Organism Taxid: 6289

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): A  
Biological Unit 2 (1x):  B 
Biological Unit 3 (1x):   C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 6)

Asymmetric Unit (2, 6)
No.NameCountTypeFull Name
11SH3Ligand/Ion2-(METHYLAMINO)ETHYL DIHYDROGEN PHOSPHATE
2SAH3Ligand/IonS-ADENOSYL-L-HOMOCYSTEINE
Biological Unit 1 (2, 2)
No.NameCountTypeFull Name
11SH1Ligand/Ion2-(METHYLAMINO)ETHYL DIHYDROGEN PHOSPHATE
2SAH1Ligand/IonS-ADENOSYL-L-HOMOCYSTEINE
Biological Unit 2 (2, 2)
No.NameCountTypeFull Name
11SH1Ligand/Ion2-(METHYLAMINO)ETHYL DIHYDROGEN PHOSPHATE
2SAH1Ligand/IonS-ADENOSYL-L-HOMOCYSTEINE
Biological Unit 3 (2, 2)
No.NameCountTypeFull Name
11SH1Ligand/Ion2-(METHYLAMINO)ETHYL DIHYDROGEN PHOSPHATE
2SAH1Ligand/IonS-ADENOSYL-L-HOMOCYSTEINE

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:183 , ILE A:200 , SER A:201 , GLY A:228 , VAL A:229 , GLY A:230 , ASP A:250 , LEU A:251 , SER A:252 , MET A:255 , CYS A:276 , ASP A:277 , ALA A:278 , ARG A:294 , CYS A:296 , HIS A:299 , ILE A:300 , 1SH A:702 , HOH A:806 , HOH A:809 , HOH A:815 , HOH A:817BINDING SITE FOR RESIDUE SAH A 701
2AC2SOFTWAREGLN A:182 , TYR A:183 , TYR A:191 , ILE A:200 , ASP A:295 , GLN A:298 , TYR A:325 , TYR A:339 , ARG A:343 , TYR A:345 , LYS A:411 , SAH A:701 , HOH A:862BINDING SITE FOR RESIDUE 1SH A 702
3AC3SOFTWAREPHE B:174 , ILE B:200 , SER B:201 , GLY B:228 , VAL B:229 , GLY B:230 , ASP B:250 , LEU B:251 , SER B:252 , MET B:255 , CYS B:276 , ASP B:277 , ALA B:278 , ARG B:294 , CYS B:296 , HIS B:299 , ILE B:300 , 1SH B:702 , HOH B:802 , HOH B:812 , HOH B:824 , HOH B:863BINDING SITE FOR RESIDUE SAH B 701
4AC4SOFTWAREGLN B:182 , TYR B:183 , TYR B:191 , ILE B:200 , ASP B:295 , GLN B:298 , TYR B:325 , TYR B:339 , ARG B:343 , TYR B:345 , LYS B:411 , SAH B:701 , HOH B:815BINDING SITE FOR RESIDUE 1SH B 702
5AC5SOFTWAREPHE C:174 , ILE C:200 , SER C:201 , GLY C:228 , VAL C:229 , GLY C:230 , ASP C:250 , LEU C:251 , SER C:252 , MET C:255 , CYS C:276 , ASP C:277 , ALA C:278 , ARG C:294 , CYS C:296 , HIS C:299 , 1SH C:702 , HOH C:803 , HOH C:810 , HOH C:813 , HOH C:831BINDING SITE FOR RESIDUE SAH C 701
6AC6SOFTWAREGLN C:182 , TYR C:183 , TYR C:191 , ILE C:200 , ASP C:295 , TYR C:325 , TYR C:339 , ARG C:343 , TYR C:345 , LYS C:411 , SAH C:701 , HOH C:843BINDING SITE FOR RESIDUE 1SH C 702

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4KRI)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4KRI)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4KRI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4KRI)

(-) Exons   (0, 0)

(no "Exon" information available for 4KRI)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:429
                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhh.....eeeee..hhhhhhhhhh......eeeee.hhhhhhhh..eeeeeee....hhhhhhhhhhhhhhhhhhheeeeeeeeeeee.......hhhhhhhhhhhhh.eee..eeeeeeeeeeeehhhhhhhhh...eeeeeeeeeee....hhhhhhhhh..hhhhhhhhhhhhh......hhhhhhhhhhhh........eeeee....hhhhhhhhhhhh.eeeeee.hhhhhhhhhhhhhhhh...eeeee............eeeeeee.hhhhh.hhhhhhhhhhhheeeeeeeeeeeeee.....hhhhhhhhhhhh....hhhhhhhhhhhhh.eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh..eeeeeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4kri A  -1 ASMPAVERQLIECLHHVIKGAEPQQVGILCPQDDQRKALTEQFGSKTATSFCKEVDSLKNLSNLDALIVNQALDEEINDSEKLDKFITAALRSLRTDGVLILRQDLSKVKEMKKMAMLTDYFDVFRLEEGNGNVGFQFYAVNEVLDSVYVHQNWLDFIWTLMKKPFPKVVSFRDFLDRTQYTDTGIFAYEWIFGNNFISPGGWNQNLAILKRFGPMKTGQRMLDIGVGIGGGARQAASEFGLQVHGVDLSTNMLAVALERVHKEKDARVTYAVCDACEYEFEPNSFDYVFSRDCIQHIKDTDKLFSRIYRALKPGGKVLITMYGVGHGTLSESFKEYVSQRQYYLKNLEQIEEIAKKTGFIDIEVENMTPRFKEILLEERERIEQDKETFLAKFSQNAYDGLVSGWKSKLQYIADDNHNWNFFAAVKPQ 431
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422         
                                                                                                                                                                                                 166|                                                                                                                                                                                                                                                                    
                                                                                                                                                                                                  171                                                                                                                                                                                                                                                                    


Chain B from PDB  Type:PROTEIN  Length:425
                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhh.....eeeee..hhhhhhhhhh......eeeee.hhhhhhhh..eeeeeee....hhhhhhhhhhhhhhhhhhheeeeeeeeeeee.......hhhhhhhhhhhhh.ee....eeeeeeeeeeehhhhhhhhh...eeeeeeeeeee...hhhhhhhhh..hhhhhhhhhhhhh......hhhhhhhhhhhh........eeeee....hhhhhhhhhhhh.eeeeee.hhhhhhhhhhhhhhhh...eeeee............eeeeeee.hhhhh.hhhhhhhhhhhheeeeeeeeeeeeee.....hhhhhhhhhhhh....hhhhhhhhhhhhh.eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh..eeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4kri B   2 PAVERQLIECLHHVIKGAEPQQVGILCPQDDQRKALTEQFGSKTATSFCKEVDSLKNLSNLDALIVNQALDEEINDSEKLDKFITAALRSLRTDGVLILRQDLSKVKEMKKMAMLTDYFDVFRLEEGNGNVGFQFYAVNEVLDSVYVHQNWLDFIWTLMKKPFPVVSFRDFLDRTQYTDTGIFAYEWIFGNNFISPGGWNQNLAILKRFGPMKTGQRMLDIGVGIGGGARQAASEFGLQVHGVDLSTNMLAVALERVHKEKDARVTYAVCDACEYEFEPNSFDYVFSRDCIQHIKDTDKLFSRIYRALKPGGKVLITMYGVGHGTLSESFKEYVSQRQYYLKNLEQIEEIAKKTGFIDIEVENMTPRFKEILLEERERIEQDKETFLAKFSQNAYDGLVSGWKSKLQYIADDNHNWNFFAAVKPQ 431
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161   ||  176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426     
                                                                                                                                                                                             165|                                                                                                                                                                                                                                                                    
                                                                                                                                                                                              171                                                                                                                                                                                                                                                                    


Chain C from PDB  Type:PROTEIN  Length:427
                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhh.....eeeee..hhhhhhhhhhh.....eeeee.hhhhhhhh..eeeeeee....hhhhhhhhhhhhhhhhhhheeeeeeeeeeee.......hhhhhhhhhhhhh.eee..eeeeeeeeeeeehhhhhhhhh...eeeeeeeeeee..hhhhhhhhh..hhhhhhhhhhhhh......hhhhhhhhhhhhhh......eeeee....hhhhhhhhhhhh.eeeeee.hhhhhhhhhhhhhhh....eeeee............eeeeeee.hhhhh.hhhhhhhhhhhheeeeeeeeeeeeee.....hhhhhhhhhhhh....hhhhhhhhhhhhh.eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4kri C  -1 ASMPAVERQLIECLHHVIKGAEPQQVGILCPQDDQRKALTEQFGSKTATSFCKEVDSLKNLSNLDALIVNQALDEEINDSEKLDKFITAALRSLRTDGVLILRQDLSKVKEMKKMAMLTDYFDVFRLEEGNGNVGFQFYAVNEVLDSVYVHQNWLDFIWTLMKKPFPVSFRDFLDRTQYTDTGIFAYEWIFGNNFISPGGWNQNLAILKRFGPMKTGQRMLDIGVGIGGGARQAASEFGLQVHGVDLSTNMLAVALERVHKEKDARVTYAVCDACEYEFEPNSFDYVFSRDCIQHIKDTDKLFSRIYRALKPGGKVLITMYGVGHGTLSESFKEYVSQRQYYLKNLEQIEEIAKKTGFIDIEVENMTPRFKEILLEERERIEQDKETFLAKFSQNAYDGLVSGWKSKLQYIADDNHNWNFFAAVKPQ 431
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158      |174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       
                                                                                                                                                                                                165|                                                                                                                                                                                                                                                                   
                                                                                                                                                                                                 172
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4KRI)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4KRI)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4KRI)

(-) Gene Ontology  (6, 6)

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        U5HK48_HAECO | U5HK48: 4krh

(-) Related Entries Specified in the PDB File

4krg 4krh