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(-) Description

Title :  SEMET HAEMONCHUS CONTORTUS PHOSPHOETHANOLAMINE N-METHYLTRANSFERASE 2 IN COMPLEX WITH S-ADENOSYL-L-METHIONINE
 
Authors :  S. G. Lee, J. M. Jez
Date :  16 May 13  (Deposition) - 25 Sep 13  (Release) - 30 Oct 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Methyltransferase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. G. Lee, J. M. Jez
Evolution Of Structure And Mechanistic Divergence In Di-Domain Methyltransferases From Nematode Phosphocholine Biosynthesis.
Structure V. 21 1778 2013
PubMed-ID: 24012478  |  Reference-DOI: 10.1016/J.STR.2013.07.023

(-) Compounds

Molecule 1 - PHOSPHOETHANOLAMINE N-METHYLTRANSFERASE 2
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-28A-HCPMT2
    Expression System Strain: ROSETTA II (DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: HAEMONCHUS CONTORTUS
    Organism Taxid: 6289

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 22)

Asymmetric Unit (2, 22)
No.NameCountTypeFull Name
1MSE20Mod. Amino AcidSELENOMETHIONINE
2SAM2Ligand/IonS-ADENOSYLMETHIONINE
Biological Unit 1 (2, 11)
No.NameCountTypeFull Name
1MSE10Mod. Amino AcidSELENOMETHIONINE
2SAM1Ligand/IonS-ADENOSYLMETHIONINE
Biological Unit 2 (2, 11)
No.NameCountTypeFull Name
1MSE10Mod. Amino AcidSELENOMETHIONINE
2SAM1Ligand/IonS-ADENOSYLMETHIONINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:174 , TYR A:183 , ILE A:200 , SER A:201 , GLY A:228 , ASP A:250 , LEU A:251 , SER A:252 , MSE A:255 , CYS A:276 , ASP A:277 , ALA A:278 , ARG A:294 , ASP A:295 , CYS A:296 , HIS A:299BINDING SITE FOR RESIDUE SAM A 900
2AC2SOFTWAREPHE B:174 , TYR B:183 , PHE B:199 , ILE B:200 , SER B:201 , GLY B:228 , ASP B:250 , LEU B:251 , SER B:252 , MSE B:255 , CYS B:276 , ASP B:277 , ALA B:278 , ARG B:294 , ASP B:295 , CYS B:296 , HIS B:299BINDING SITE FOR RESIDUE SAM B 900

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4KRH)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4KRH)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4KRH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4KRH)

(-) Exons   (0, 0)

(no "Exon" information available for 4KRH)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:430
                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhh.....eeeee..hhhhhhhhhh......eeeee.hhhhhhhh..eeeeeee....hhhhhhhhhhhhhhhhhhheeeeeeeeeeee.......hhhhhhhhhhhhh.eee..eeeeeeeeeeeehhhhhhhhh...eeeeeeeeeee.....hhhhhhhhh..hhhhhhhhhhhhh......hhhhhhhhhhhhhh......eeeee....hhhhhhhhhhhh.eeeeee.hhhhhhhhhhhhhhhh...eeeeee...........eeeeeee.hhhhh.hhhhhhhhhhhheeeeeeeeeeeeee.....hhhhhhhhhhhh....hhhhhhhhhhhhh.eeeeeeehhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh..eeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4krh A  -1 ASmPAVERQLIECLHHVIKGAEPQQVGILCPQDDQRKALTEQFGSKTATSFCKEVDSLKNLSNLDALIVNQALDEEINDSEKLDKFITAALRSLRTDGVLILRQDLSKVKEmKKmAmLTDYFDVFRLEEGNGNVGFQFYAVNEVLDSVYVHQNWLDFIWTLmKKPFPKGVVSFRDFLDRTQYTDTGIFAYEWIFGNNFISPGGWNQNLAILKRFGPmKTGQRmLDIGVGIGGGARQAASEFGLQVHGVDLSTNmLAVALERVHKEKDARVTYAVCDACEYEFEPNSFDYVFSRDCIQHIKDTDKLFSRIYRALKPGGKVLITmYGVGHGTLSESFKEYVSQRQYYLKNLEQIEEIAKKTGFIDIEVENmTPRFKEILLEERERIEQDKETFLAKFSQNAYDGLVSGWKSKLQYIADDNHNWNFFAAVKPQ 431
                              |      8        18        28        38        48        58        68        78        88        98       108 |  | |118       128       138       148       158 |     171       181       191       201       211      |221  |    231       241       251   |   261       271       281       291       301       311       321  |    331       341       351       361       371       381       391       401       411       421       431
                              |                                                                                                          110-MSE|                                          160-MSE66|                                             218-MSE |                            255-MSE                                                              324-MSE                                       370-MSE                                                         
                              1-MSE                                                                                                         113-MSE                                               170                                                   224-MSE                                                                                                                                                                                                           
                                                                                                                                              115-MSE                                                                                                                                                                                                                                                                                                                     


Chain B from PDB  Type:PROTEIN  Length:430
                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhh.....eeeee..hhhhhhhhhh......eeeee.hhhhhhhh..eeeeeee....hhhhhhhhhhhhhhhhhhheeeeeeeeeeee.......hhhhhhhhhhhhh.eee..eeeeeeeeeeeehhhhhhhhh...eeeeeeeeeee.....hhhhhhhhh..hhhhhhhhhhhhh......hhhhhhhhhhhhhh......eeeee....hhhhhhhhhhhh.eeeeee.hhhhhhhhhhhhhhhh...eeeeee...........eeeeeee.hhhhh.hhhhhhhhhhhheeeeeeeeeeeeee.....hhhhhhhhhhhh....hhhhhhhhhhhhh.eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh..eeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4krh B  -1 ASmPAVERQLIECLHHVIKGAEPQQVGILCPQDDQRKALTEQFGSKTATSFCKEVDSLKNLSNLDALIVNQALDEEINDSEKLDKFITAALRSLRTDGVLILRQDLSKVKEmKKmAmLTDYFDVFRLEEGNGNVGFQFYAVNEVLDSVYVHQNWLDFIWTLmKKPFPKGVVSFRDFLDRTQYTDTGIFAYEWIFGNNFISPGGWNQNLAILKRFGPmKTGQRmLDIGVGIGGGARQAASEFGLQVHGVDLSTNmLAVALERVHKEKDARVTYAVCDACEYEFEPNSFDYVFSRDCIQHIKDTDKLFSRIYRALKPGGKVLITmYGVGHGTLSESFKEYVSQRQYYLKNLEQIEEIAKKTGFIDIEVENmTPRFKEILLEERERIEQDKETFLAKFSQNAYDGLVSGWKSKLQYIADDNHNWNFFAAVKPQ 431
                              |      8        18        28        38        48        58        68        78        88        98       108 |  | |118       128       138       148       158 |     171       181       191       201       211      |221  |    231       241       251   |   261       271       281       291       301       311       321  |    331       341       351       361       371       381       391       401       411       421       431
                              1-MSE                                                                                                      110-MSE|                                          160-MSE66|                                             218-MSE |                            255-MSE                                                              324-MSE                                       370-MSE                                                         
                                                                                                                                            113-MSE                                               170                                                   224-MSE                                                                                                                                                                                                           
                                                                                                                                              115-MSE
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4KRH)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4KRH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4KRH)

(-) Gene Ontology  (6, 6)

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 Related Entries

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        U5HK48_HAECO | U5HK48: 4kri

(-) Related Entries Specified in the PDB File

4krg 4kri