4KMG - JenaLib

Title :   CRYSTAL STRUCTURE OF CYTOCHROME C6B FROM SYNECHOCOCCUS SP. WH8102

Authors :   P. Zatwarnicki, S. Krzywda, J. Barciszewski, M. Jaskolski, A. Szczepa

Date :   08 May 13 (Deposition) - 26 Mar 14 (Release) - 26 Mar 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.40

Chains :   Asym. Unit : A
Biol. Unit 1: A  (1x)
Biol. Unit 2: A  (2x)

Keywords :   Cytochrome C6, Electron Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   P. Zatwarnicki, J. Barciszewski, S. Krzywda, M. Jaskolski, P. Kolesinski, A. Szczepaniak
Cytochrome C6B Of Synechococcus Sp. Wh 8102 - Crystal Structure And Basic Properties Of Novel C6-Like Family Representative.
Biochem. Biophys. Res. Commun. V. 443 1131 2014
PubMed-ID: 24216109 | Reference-DOI: 10.1016/J.BBRC.2013.10.167

Compounds

Molecule 1 - CYTOCHROME C6 (SOLUBLE CYTOCHROME F) (CYTOCHROME C553)
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PUC19
	Expression System Strain	:	DH5A
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	NP_897609, PETJ, SYNW1516
	Organism Scientific	:	SYNECHOCOCCUS SP.
	Organism Taxid	:	84588
	Strain	:	WH8102

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 2)

Asymmetric Unit (2, 2)

No.	Name	Count	Type	Full Name
1	HEM	1	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE
2	NA	1	Ligand/Ion	SODIUM ION

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	HEM	1	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE
2	NA	-1	Ligand/Ion	SODIUM ION

Biological Unit 2 (1, 2)

No.	Name	Count	Type	Full Name
1	HEM	2	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE
2	NA	-1	Ligand/Ion	SODIUM ION

Sites (2, 2)

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	HIS A:13 , CYS A:14 , CYS A:17 , HIS A:18 , ASN A:23 , ILE A:25 , ARG A:26 , LYS A:29 , ASN A:30 , LEU A:31 , THR A:35 , GLN A:39 , LEU A:41 , ILE A:50 , ILE A:55 , GLY A:56 , GLN A:57 , MET A:58 , TYR A:61 , ASP A:63 , ILE A:77 , HOH A:218 , HOH A:273	BINDING SITE FOR RESIDUE HEM A 101
2	AC2	SOFTWARE	ASN A:83 , THR A:86	BINDING SITE FOR RESIDUE NA A 102

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

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Chain A from PDB  Type:PROTEIN  Length:88
                                                                                                                       
               SCOP domains d4kmga_ A: automated matches                                                             SCOP domains
               CATH domains ---------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhh.........hhhhhhhh...hhhhhhhhhhhee..ee........hhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------- Transcript
                  4kmg A  1 ETSGEGAVLFGQHCAGCHVNGGNIIRRGKNLKLATLKRQGLDSTEAIASIARKGIGQMSGYGDKLGEGGDQLVAGWILEQAQNAWTQG 88
                                    10        20        30        40        50        60        70        80

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Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (3, 3)

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