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(-) Description

Title :  CRYSTAL STRUCTURE OF CYTOCHROME C6C FROM SYNECHOCOCCUS SP. PCC 7002
 
Authors :  S. Krzywda, W. Bialek, P. Zatwarnicki, M. Jaskolski, A. Szczepaniak
Date :  05 Apr 12  (Deposition) - 10 Apr 13  (Release) - 10 Apr 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.03
Chains :  Asym./Biol. Unit :  A
Keywords :  Cytochrome C6C, Electron Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  W. Bialek, S. Krzywda, P. Zatwarnicki, M. Jaskolski, A. Szczepaniak
Cytochrome C6 And C6C From Synechococcus Sp. Pcc 7002 - Structure And Function.
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - CYTOCHROME C6
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PUCPF2
    Expression System Strain: DH5A
    Expression System Taxid: 668369
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 29-115
    Gene: PETJ, PETJ2, SYNPCC7002_A2391
    Organism Scientific: SYNECHOCOCCUS SP.
    Organism Taxid: 32049
    Other Details: CO-EXPRESSION WITH PEC86
    Strain: ATCC 27264 / PCC 7002 / PR-6
    Synonym: PUTATIVE CYTOCHROME C6-2

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 9)

Asymmetric/Biological Unit (3, 9)
No.NameCountTypeFull Name
1CL4Ligand/IonCHLORIDE ION
2HEM1Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
3NA4Ligand/IonSODIUM ION

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:13 , CYS A:14 , CYS A:17 , HIS A:18 , ASN A:23 , ARG A:26 , LYS A:29 , ASN A:30 , LEU A:31 , ALA A:35 , ASN A:39 , TYR A:41 , LEU A:50 , VAL A:51 , LYS A:55 , ASN A:57 , MET A:58 , TYR A:61 , HOH A:207 , HOH A:255 , HOH A:303 , HOH A:313BINDING SITE FOR RESIDUE HEM A 101
2AC2SOFTWAREARG A:26 , ASN A:57 , HOH A:207 , HOH A:301BINDING SITE FOR RESIDUE CL A 102
3AC3SOFTWAREILE A:9BINDING SITE FOR RESIDUE CL A 103
4AC4SOFTWARESER A:59 , ALA A:60BINDING SITE FOR RESIDUE CL A 104
5AC5SOFTWAREGLN A:5BINDING SITE FOR RESIDUE CL A 105
6AC6SOFTWAREHOH A:229 , HOH A:230 , HOH A:297 , HOH A:306BINDING SITE FOR RESIDUE NA A 106
7AC7SOFTWAREGLN A:8 , GLU A:11 , HOH A:226 , HOH A:320BINDING SITE FOR RESIDUE NA A 107
8AC8SOFTWAREVAL A:25 , NA A:109 , HOH A:212 , HOH A:240 , HOH A:241 , HOH A:290BINDING SITE FOR RESIDUE NA A 108
9AC9SOFTWAREASP A:63 , NA A:108 , HOH A:212 , HOH A:236 , HOH A:241 , HOH A:281BINDING SITE FOR RESIDUE NA A 109

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4EIE)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4EIE)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4EIE)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4EIE)

(-) Exons   (0, 0)

(no "Exon" information available for 4EIE)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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Chain A from PDB  Type:PROTEIN  Length:82
                                                                                                                 
               SCOP domains d4eiea_ A: automated matches                                                       SCOP domains
               CATH domains ---------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhh.........hhhhhhhhh..hhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------- Transcript
                  4eie A  4 DQGAQIFEAHCAGCHLNGGNIVRRGKNLKKRAMAKNGYTSVEAIANLVTQGKGNMSAYGDKLSSEEIQAVSQYVLQQSQTDW 85
                                    13        23        33        43        53        63        73        83
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 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4EIE)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4EIE)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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        Q8KX15_SYNP2 | Q8KX15: 4eif

(-) Related Entries Specified in the PDB File

3dr0 THE SAME PROTEIN AT 1.23 A RESOLUTION
4eic
4eid
4eif