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(-) Description

Title :  CRYSTAL STRUCTURE OF ZALPHA DOMAIN FROM CARASSIUS AURATUS PKZ IN COMPLEX WITH Z-DNA
 
Authors :  D. Kim, K. K. Kim
Date :  08 May 13  (Deposition) - 03 Jul 13  (Release) - 18 Jun 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  A,B  (2x)
Keywords :  Zalpha, Z-Dna, Pkz, Goldfish, Transferase-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Kim, J. Hur, K. Park, S. Bae, D. Shin, S. C. Ha, H. Y. Hwang, S. Hohng, J. H. Lee, S. Lee, Y. G. Kim, K. K. Kim
Distinct Z-Dna Binding Mode Of A Pkr-Like Protein Kinase Containing A Z-Dna Binding Domain (Pkz).
Nucleic Acids Res. V. 42 5937 2014
PubMed-ID: 24682817  |  Reference-DOI: 10.1093/NAR/GKU189

(-) Compounds

Molecule 1 - INTERFERON-INDUCIBLE AND DOUBLE-STRANDED-DEPENDENT EIF- 2KINASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Common: GOLDFISH
    Organism Scientific: CARASSIUS AURATUS
    Organism Taxid: 7957
 
Molecule 2 - DNA (5'-D(*TP*CP*GP*CP*GP*CP*G)-3')
    Chains: B
    Engineered: YES
    Other Details: SYNTHETIC OLIGONUCLEOTIDE
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): AB
Biological Unit 2 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1MN1Ligand/IonMANGANESE (II) ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1MN-1Ligand/IonMANGANESE (II) ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1MN-1Ligand/IonMANGANESE (II) ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHOH A:102 , DC B:63 , DG B:64 , HOH B:206 , HOH B:207 , HOH B:212BINDING SITE FOR RESIDUE MN B 101

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4KMF)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Lys A:56 -Pro A:57

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4KMF)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4KMF)

(-) Exons   (0, 0)

(no "Exon" information available for 4KMF)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:PROTEIN  Length:62
                                                                                             
               SCOP domains -------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhh.eehhhhhhhhh.hhhhhhhhhhhhhhh..eee......eeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------- Transcript
                  4kmf A  2 SAETQMERKIIDFLRQNGKSIALTIAKEIGLDKSTVNRHLYNLQRSNQVFNSNEKPPVWDLM 63
                                    11        21        31        41        51        61  


Chain B from PDB  Type:DNA  Length:7
                                      
                  4kmf B 62 TCGCGCG 68
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4KMF)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4KMF)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4KMF)

(-) Gene Ontology  (17, 17)

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        Q7T2M9_CARAU | Q7T2M9: 2rvc

(-) Related Entries Specified in the PDB File

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