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(-) Description

Title :  CRYSTAL STRUCTURE OF SUFUD60-GLI1P
 
Authors :  Y. Zhang, X. Qi, Z. Zhang, G. Wu
Date :  08 May 13  (Deposition) - 20 Nov 13  (Release) - 12 Feb 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  A,B  (2x)
Keywords :  Protein Peptide Complex, Protein Binding-Transcription Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Zhang, L. Fu, X. Qi, Z. Zhang, Y. Xia, J. Jia, J. Jiang, Y. Zhao, G. Wu
Structural Insight Into The Mutual Recognition And Regulation Between Suppressor Of Fused And Gli/Ci.
Nat Commun V. 4 2608 2013
PubMed-ID: 24217340  |  Reference-DOI: 10.1038/NCOMMS3608

(-) Compounds

Molecule 1 - SUFU
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 1-285, 346-484
    Gene: SUFU, UNQ650/PRO1280
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: SUFUH
 
Molecule 2 - ZINC FINGER PROTEIN GLI1
    Chains: B
    Engineered: YES
    Fragment: UNP RESIDUES 112-128
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: CHEMICAL SYNTHESIS
    Synonym: GLIOMA-ASSOCIATED ONCOGENE, ONCOGENE GLI
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): AB
Biological Unit 2 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 7)

Asymmetric Unit (2, 7)
No.NameCountTypeFull Name
1DTT1Ligand/Ion2,3-DIHYDROXY-1,4-DITHIOBUTANE
2GOL6Ligand/IonGLYCEROL
Biological Unit 1 (2, 7)
No.NameCountTypeFull Name
1DTT1Ligand/Ion2,3-DIHYDROXY-1,4-DITHIOBUTANE
2GOL6Ligand/IonGLYCEROL
Biological Unit 2 (2, 14)
No.NameCountTypeFull Name
1DTT2Ligand/Ion2,3-DIHYDROXY-1,4-DITHIOBUTANE
2GOL12Ligand/IonGLYCEROL

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:367 , PRO A:423 , HOH A:795BINDING SITE FOR RESIDUE GOL A 501
2AC2SOFTWAREPHE A:116 , GLY A:117 , PHE A:118 , THR A:154 , PHE A:155 , THR A:196 , DTT A:507 , HOH A:660BINDING SITE FOR RESIDUE GOL A 502
3AC3SOFTWAREHIS A:105 , PHE A:116 , GLU A:367 , HOH A:736 , HOH A:750 , HOH A:768BINDING SITE FOR RESIDUE GOL A 503
4AC4SOFTWARELEU A:34 , TYR A:38 , GLN A:53 , ILE A:57 , LYS A:59 , TYR A:70 , HOH A:704 , HOH A:814BINDING SITE FOR RESIDUE GOL A 504
5AC5SOFTWARETYR A:38 , ARG A:42 , GLN A:48 , PRO A:49 , TYR A:74 , HOH A:790BINDING SITE FOR RESIDUE GOL A 505
6AC6SOFTWARELEU A:29 , PHE A:30 , LEU A:62 , PRO A:227BINDING SITE FOR RESIDUE GOL A 506
7AC7SOFTWARECYS A:156 , GOL A:502 , HOH A:649BINDING SITE FOR RESIDUE DTT A 507

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4KMD)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Leu A:458 -Pro A:459

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4KMD)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4KMD)

(-) Exons   (0, 0)

(no "Exon" information available for 4KMD)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:367
                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhh......eeee...hhhhh......eeeeeee..hhhhh...eeeeeee...................eeeeeeeeeeeee.........hhhhhhhhhhhhhhhhhh.......ee..............eeeeee......eee..eeeeeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhh..eeeeee.eeee.......ee...eeeeehhhhhhhhhhhhhhhhhhh..eeeee.....eeeee..............eeee..eeeee.hhhhhhhhhhhh......eeeeehhh.eeeee.hhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4kmd A  28 SLFPPGLHAIYGECRRLYPDQPNPLQVTAIVKYWLGGPDPLDYVSMYRNVGSPSANIPEHWHYISFGLSDLYGDNRVHEFTGTDGPSGFGFELTFRLKRETGESAPPTWPAELMQGLARYVFQSENTFCSGDHVSWHSPLDNSESRIQHMLLTEDPQMQPVQTPFGVVTFLQIVGVCTEELHSAQQWNGQGILELLRTVPIAGGPWLITDMRRGETIFEIDPHLQERVDKGIETDGSNLSGVSAKCAWDDLELIRTRQLESVHLKFNQESGALIPLCLRGRLLHGRHFTYKSITGDMAITFVSTGVEGAFATEEHPYAAHGPWLQILLTEEFVEKMLEDLEDLKLPKEYSWPEKKLKVSILPDVVFD 480
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277||     367       377       387       397       407       417       427       437       447  ||   463       473       
                                                                                                                                                                                                                                                                                    278|                                                                                        450|                       
                                                                                                                                                                                                                                                                                     359                                                                                         457                       


Chain B from PDB  Type:PROTEIN  Length:10
                                          
               SCOP domains ---------- SCOP domains
               CATH domains ---------- CATH domains
               Pfam domains ---------- Pfam domains
         Sec.struct. author .eeee..... Sec.struct. author
                 SAPs(SNPs) ---------- SAPs(SNPs)
                    PROSITE ---------- PROSITE
                 Transcript ---------- Transcript
                 4kmd B 119 GSYGHLSIGT 128
                                   128
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4KMD)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4KMD)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4KMD)

(-) Gene Ontology  (76, 86)

Asymmetric Unit(hide GO term definitions)

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  SUFU_HUMAN | Q9UMX1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GLI1_HUMAN | P08151: 2gli 4blb
        SUFU_HUMAN | Q9UMX1: 1m1l 4bl8 4bl9 4bla 4blb 4bld 4km8 4km9 4kmh

(-) Related Entries Specified in the PDB File

4km8 4km9 4kma 4kmh