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(-) Description

Title :  CRYSTAL STRUCTURE OF MALEYLACETOACETATE ISOMERASE FROM ANAEROMYXOBACTER DEHALOGENANS 2CP-1, TARGET EFI-507175, WITH BOUND GSH IN THE ACTIVE SITE
 
Authors :  J. Kim, R. Toro, R. Bhosle, N. F. Al Obaidi, L. L. Morisco, S. R. Wasserma S. Sojitra, E. Washington, A. Scott Glenn, S. Chowdhury, B. Evans, J. B. Hillerich, J. Love, R. D. Seidel, H. J. Imker, M. Stead, J. A. Gerlt, S Enzyme Function Initiative
Date :  25 Apr 13  (Deposition) - 08 May 13  (Release) - 08 May 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Structural Genomics, Enzyme Function Initiative, Efi, Gsh, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Kim, R. Toro, R. Bhosle, N. F. Al Obaidi, L. L. Morisco, S. R. Wasserman, S. Sojitra, E. Washington, A. Scott Glenn, S. Chowdhury, B. Evans, J. Hammonds, B. Hillerich, J. Love, R. D. Seidel, H. J. Imker, M. Stead, J. A. Gerlt, S. C. Almo, Enzyme Function Initiative
Crystal Structure Of Maleylacetoacetate Isomerase From Anaeromyxobacter Dehalogenans 2Cp-1, Target Efi-507175, Wit Bound Gsh In The Active Site
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - MALEYLACETOACETATE ISOMERASE
    Chains: A, B
    EC Number: 5.2.1.2
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: A2CP1_3570
    Organism Scientific: ANAEROMYXOBACTER DEHALOGENANS
    Organism Taxid: 455488
    Strain: 2CP-1 / ATCC BAA-258

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 5)

Asymmetric/Biological Unit (3, 5)
No.NameCountTypeFull Name
1CIT1Ligand/IonCITRIC ACID
2GOL2Ligand/IonGLYCEROL
3GSH2Ligand/IonGLUTATHIONE

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:13 , ARG A:16 , VAL A:54 , PRO A:55 , GLN A:70 , SER A:71 , ASN A:106 , GLN A:110 , ASN A:114 , LEU A:116 , HOH A:411 , HOH A:445 , HOH A:513 , SER B:107 , ARG B:139 , HOH B:552BINDING SITE FOR RESIDUE GSH A 301
2AC2SOFTWARETYR A:8 , ARG A:10 , GLU A:39 , ALA A:115 , ARG A:177 , HOH A:446 , HOH A:515BINDING SITE FOR RESIDUE CIT A 302
3AC3SOFTWAREHIS A:104 , GLY A:108 , ARG A:139 , HOH A:486 , GLN B:53 , GLN B:70BINDING SITE FOR RESIDUE GOL A 303
4AC4SOFTWARESER A:107 , HOH A:484 , SER B:11 , SER B:13 , ARG B:16 , LEU B:35 , GLN B:38 , GLU B:39 , GLN B:42 , SER B:52 , GLN B:53 , VAL B:54 , PRO B:55 , GLN B:70 , SER B:71 , ASN B:106 , ASN B:114 , HOH B:420 , HOH B:532 , HOH B:539BINDING SITE FOR RESIDUE GSH B 301
5AC5SOFTWAREALA A:96 , ARG A:97 , ALA A:100 , LEU B:67 , LEU B:68 , VAL B:69 , ALA B:73 , HOH B:553BINDING SITE FOR RESIDUE GOL B 302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4KDY)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Val A:54 -Pro A:55
2Glu A:84 -Pro A:85
3Val B:54 -Pro B:55
4Glu B:84 -Pro B:85

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4KDY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4KDY)

(-) Exons   (0, 0)

(no "Exon" information available for 4KDY)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:222
                                                                                                                                                                                                                                                              
               SCOP domains d4kdya1 A:-6-85 automated matches                                                      d4kdya2 A:86-220 automated matches                                                                                                      SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ........eeeeee...hhhhhhhhhhhhhh....eeee.hhhhhhhhhhhh.....eeeeee..eeeeeehhhhhhhhhhhhh........hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhh....hhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4kdy A  -6 ENLYFQSMTLRLYSYWRSSSAWRVRLGLALKGLAYEYRAVDLLAQEQFQAAHMSQVPVLEVEEDGRTHLLVQSMAILEWLEERHPEPALLPPDLWGRARVRALAEHVNSGTQPMQNALVLRMLREKVPGWDREWARFFIARGLAALETAVRDGAGRFSHGDAPTLADCYLVPQLYNARRFGLDLEPYPTLRRVDEACAALAPFQAAHPDRQPDAPPPDRRTP 220
                                     3        13        23        33        43 ||     58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218  
                                                                              45|                                                                                                                                                                         
                                                                               51                                                                                                                                                                         


Chain B from PDB  Type:PROTEIN  Length:216
                                                                                                                                                                                                                                                        
               SCOP domains d4kdyb1 B:-2-85 automated matches                                                       d4kdyb2 B:86-213 automated matches                                                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeee...hhhhhhhhhhhhhh....eeee.hhhhhhhhhhhh..........eeeeee..eeeeeehhhhhhhhhhhhh........hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4kdy B  -2 FQSMTLRLYSYWRSSSAWRVRLGLALKGLAYEYRAVDLLAQEQFQAAHQARNPMSQVPVLEVEEDGRTHLLVQSMAILEWLEERHPEPALLPPDLWGRARVRALAEHVNSGTQPMQNALVLRMLREKVPGWDREWARFFIARGLAALETAVRDGAGRFSHGDAPTLADCYLVPQLYNARRFGLDLEPYPTLRRVDEACAALAPFQAAHPDRQPDAP 213
                                     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 4)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4KDY)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4KDY)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)

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    Val B:54 - Pro B:55   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        B8J605_ANAD2 | B8J605: 4igj 4kae

(-) Related Entries Specified in the PDB File

4igj MALEYLACETOACETATE ISOMERASE FROM ANAEROMYXOBACTER DEHALOGENANS 2CP-1 BOUND TO SULFATE RELATED ID: EFI-507175 RELATED DB: TARGETTRACK
4kae MALEYLACETOACETATE ISOMERASE FROM ANAEROMYXOBACTER DEHALOGENANS 2CP-1 BOUND TO DICARBOXYETHYL GLUTATHIONE