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(-) Description

Title :  CRYSTAL STRUCTURE OF MALEYLACETOACETATE ISOMERASE FROM ANAEROMYXOBACTER DEHALOGENANS 2CP-1, TARGET EFI-507175
 
Authors :  J. Kim, R. Toro, R. Bhosle, N. F. Al Obaidi, L. L. Morisco, S. R. Wasserma S. Sojitra, E. Washington, A. Scott Glenn, S. Chowdhury, B. Evans, J. B. Hillerich, J. Love, R. D. Seidel, H. J. Imker, R. N. Armstrong, J. A. G S. C. Almo
Date :  17 Dec 12  (Deposition) - 30 Jan 13  (Release) - 30 Jan 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.48
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Structural Genomics, Enzyme Function Initiative, Glutathione, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Kim, R. Toro, R. Bhosle, N. F. Al Obaidi, L. L. Morisco, S. R. Wasserman, S. Sojitra, E. Washington, A. Scott Glenn, S. Chowdhury, B. Evans, J. Hammonds, B. Hillerich, J. Love, R. D. Seidel, H. J. Imker, R. N. Armstrong, J. A. Gerlt, S. C. Almo
Crystal Structure Of Maleylacetoacetate Isomerase From Anaeromyxobacter Dehalogenans 2Cp-1, Target Efi-507175
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - MALEYLACETOACETATE ISOMERASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: A2CP1_3570
    Organism Scientific: ANAEROMYXOBACTER DEHALOGENANS
    Organism Taxid: 455488
    Strain: 2CP-1 / ATCC BAA-258

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1SO42Ligand/IonSULFATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:10 , SER A:11 , SER A:12 , GLN A:110 , GLN A:113 , ASN A:174 , HOH A:462 , HOH A:486 , HOH A:492BINDING SITE FOR RESIDUE SO4 A 301
2AC2SOFTWAREARG B:10 , SER B:12 , GLN B:110 , GLN B:113 , ASN B:174 , HOH B:428 , HOH B:519 , HOH B:522 , HOH B:566BINDING SITE FOR RESIDUE SO4 B 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4IGJ)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Val A:54 -Pro A:55
2Glu A:84 -Pro A:85
3Val B:54 -Pro B:55
4Glu B:84 -Pro B:85

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4IGJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4IGJ)

(-) Exons   (0, 0)

(no "Exon" information available for 4IGJ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:212
                                                                                                                                                                                                                                                    
               SCOP domains d4igja1 A:-4-85 automated matches                                            d4igja2 A:86-220 automated matches                                                                                                      SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeee...hhhhhhhhhhhhhh....eeee...hhhhhh...eeeee...eeeehhhhhhhhhhhhh........hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhh....hhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4igj A  -4 LYFQSMTLRLYSYWRSSSAWRVRLGLALKGLAYEYRAVDLLAQEQFQVPVLEVEERTHLLVQSMAILEWLEERHPEPALLPPDLWGRARVRALAEHVNSGTQPMQNALVLRMLREKVPGWDREWARFFIARGLAALETAVRDGAGRFSHGDAPTLADCYLVPQLYNARRFGLDLEPYPTLRRVDEACAALAPFQAAHPDRQPDAPPPDRRTP 220
                                     5        15        25        35     || 56    ||  68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218  
                                                                        41|      61|                                                                                                                                                            
                                                                         53       64                                                                                                                                                            


Chain B from PDB  Type:PROTEIN  Length:210
                                                                                                                                                                                                                                                  
               SCOP domains d4igjb1 B:-2-85 automated matches                                                 d4igjb2 B:86-213 automated matches                                                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeee...hhhhhhhhhhhhhh....eeee.hhhhhhhhhhhh....eeeeee..eeeeeehhhhhhhhhhhhh........hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4igj B  -2 FQSMTLRLYSYWRSSSAWRVRLGLALKGLAYEYRAVDLLAQEQFQAAHQQVPVLEVEEDGRTHLLVQSMAILEWLEERHPEPALLPPDLWGRARVRALAEHVNSGTQPMQNALVLRMLREKVPGWDREWARFFIARGLAALETAVRDGAGRFSHGDAPTLADCYLVPQLYNARRFGLDLEPYPTLRRVDEACAALAPFQAAHPDRQPDAP 213
                                     7        17        27        37        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213
                                                                           46|                                                                                                                                                                
                                                                            53
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 4)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4IGJ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4IGJ)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Glu A:84 - Pro A:85   [ RasMol ]  
    Glu B:84 - Pro B:85   [ RasMol ]  
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        B8J605_ANAD2 | B8J605: 4kae 4kdy

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