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Title :  STRUCTURE OF THE MTB CARD/RNAP BETA SUBUNIT B1-B2 DOMAINS COMPLEX
 
Authors :  G. Gulten, J. C. Sacchettini, Tb Structural Genomics Consortium (
Date :  23 Apr 13  (Deposition) - 02 Oct 13  (Release) - 30 Oct 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.11
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Structural Genomics, Tb Structural Genomics Consortium, Tbsgc, Tudor, Dna-Dependent Rna Polymerase, Transcription Regulator, Protein- Protein Complex, Card, Dna, Sigma Factor, Transferase-Transcription Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Gulten, J. C. Sacchettini
Structure Of The Mtb Card/Rnap Beta-Lobes Complex Reveals The Molecular Basis Of Interaction And Presents A Distinct Dna-Binding Domain For Mtb Card.
Structure V. 21 1859 2013
PubMed-ID: 24055315  |  Reference-DOI: 10.1016/J.STR.2013.08.014

(-) Compounds

Molecule 1 - DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA
    Chains: A
    EC Number: 2.7.7.6
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET15B
    Expression System Strain: ROSETTA2(DE3)PLYSS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: B1 AND B2 DOMAINS OF MTB RNAP
    Gene: MT0695, MTCI376.08C, RPOB, RV0667
    Organism Scientific: MYCOBACTERIUM TUBERCULOSIS
    Organism Taxid: 1773
    Strain: H37RV
    Synonym: RNAP SUBUNIT BETA, RNA POLYMERASE SUBUNIT BETA, TRANSCRIPTASE SUBUNIT BETA
 
Molecule 2 - RNA POLYMERASE-BINDING TRANSCRIPTION FACTOR CARD
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET30B
    Expression System Strain: ROSETTA2(DE3)PLYSS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: CARD, MT3689, RV3583C
    Organism Scientific: MYCOBACTERIUM TUBERCULOSIS
    Organism Taxid: 1773
    Strain: H37RV

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4KBM)

(-) Sites  (0, 0)

(no "Site" information available for 4KBM)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4KBM)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Ser A:88 -Pro A:89
2Lys A:187 -Ser A:188

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4KBM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4KBM)

(-) Exons   (0, 0)

(no "Exon" information available for 4KBM)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:386
                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhh.hhhhhhhhhhhh.....hhhhhhhhhhh.ee.....eeeeeeeeee.....hhhhhhhh....eeeeeeeeeeee....eeeeeeeeeeeee.......eee..eee....eeee..eeeeeeee......eeeeeeee......eeeee.....eeeee.....eehhhhhhhh..hhhhhhhhhh.hhhhhhhhhhh..hhhhhhhhhhhhhhh.....hhhhhhhhhhhhhh......hhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhh...ee.......ee...........eeeehhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhh.hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4kbm A  -5 RGSHMMLLDVQTDSFEWLIGSPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSEQIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFG 426
                                 || 50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420      
                                 0|                                                                                                                                                                                                                                                                                                                                                                                           
                                 47                                                                                                                                                                                                                                                                                                                                                                                           


Chain B from PDB  Type:PROTEIN  Length:148
                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee...eeeeeeeeeee..eeeeeeee....eeeeee.hhh.........hhhhhhhhhhhhhh..hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4kbm B   2 IFKVGDTVVYPHHGAALVEAIETREQKEYLVLKVAQGDLTVRVPAENAEYVGVRDVVGQEGLDKVFQVLRAPWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGLSAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAA 160
                                    11        21   ||   35        45        55        65        75 ||     92       102       112       122       132       142       152        
                                                  25|                                             77|                                                                           
                                                   30                                              85
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4KBM)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4KBM)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4KBM)

(-) Gene Ontology  (15, 25)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Lys A:187 - Ser A:188   [ RasMol ]  
    Ser A:88 - Pro A:89   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CARD_MYCTO | P9WJG2: 4ilu 4kmc 4mfr
        CARD_MYCTU | P9WJG3: 4ilu 4kmc 4mfr
        RPOB_MYCTO | P9WGY8: 4kbj
        RPOB_MYCTU | P9WGY9: 4kbj 5uh5 5uh6 5uh8 5uh9 5uha 5uhb 5uhc 5uhd 5uhe 5uhf 5uhg

(-) Related Entries Specified in the PDB File

4kbj STRUCTURE OF MTB RNAP BETA SUBUNIT B1 AND B2 DOMAINS