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(-) Description

Title :  STRUCTURE OF MTB RNAP BETA SUBUNIT B1 AND B2 DOMAINS
 
Authors :  G. Gulten, J. C. Sacchettini, Tb Structural Genomics Consortium (
Date :  23 Apr 13  (Deposition) - 02 Oct 13  (Release) - 30 Oct 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.45
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Structural Genomics, Tb Structural Genomics Consortium, Tbsgc, Dna Dependent Rna Polymerase, Card, Trcf, Sigma Factors, Dna, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Gulten, J. C. Sacchettini
Structure Of The Mtb Card/Rnap Beta-Lobes Complex Reveals The Molecular Basis Of Interaction And Presents A Distinct Dna-Binding Domain For Mtb Card.
Structure V. 21 1859 2013
PubMed-ID: 24055315  |  Reference-DOI: 10.1016/J.STR.2013.08.014

(-) Compounds

Molecule 1 - DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA
    Chains: A, B
    EC Number: 2.7.7.6
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET15B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: B1-B2 DOMAINS OF MTB RNAP
    Gene: MT0695, MTCI376.08C, RPOB, RV0667
    Organism Scientific: MYCOBACTERIUM TUBERCULOSIS
    Organism Taxid: 1773
    Strain: H37RV
    Synonym: RNAP SUBUNIT BETA, RNA POLYMERASE SUBUNIT BETA, TRANSCRIPTASE SUBUNIT BETA

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4KBJ)

(-) Sites  (0, 0)

(no "Site" information available for 4KBJ)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4KBJ)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Ser A:88 -Pro A:89
2Gly B:72 -Asp B:73
3Ser B:88 -Pro B:89
4Ser B:94 -Gly B:95

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4KBJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4KBJ)

(-) Exons   (0, 0)

(no "Exon" information available for 4KBJ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:384
                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhh.hhhhhhhhhhh......hhhhhhhhhhh.ee.....eeeeeeeeee.....hhhhhhhh....eeeeeeeeeeee.....eeeeeeeeeeee.......eee..eee....eeee..eeeeeeee......eeeeeeee......eeeee.....eeeee.....eehhhhhhhh..hhhhhhhhhh.hhhhhhhhhh...hhhhhhhhhhhhhhh......hhhhhhhhhhhhh......hhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhh..ee.......ee.........eeeehhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhh.hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4kbj A  -6 PRGSHMMLLDVQTDSFEWLIGSPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSEQIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVETDDIDHNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFF 425
                                  ||49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359      |371       381       391       401       411       421    
                                  0|                                                                                                                                                                                                                                                                                                                            366|                                                        
                                  47                                                                                                                                                                                                                                                                                                                             369                                                        


Chain B from PDB  Type:PROTEIN  Length:386
                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhh.hhhhhhhhhhh......hhhhhhhhhhh.ee.....eeeeeeeeee.....hhhhhhh.....eeeeeeeeeeee.....eeeeeeeeeeee.......eee..eee....eeee..eeeeeeee......eeeeeeee......eeeee.....eeeee....eeehhhhhhhh..hhhhhhhhhh.hhhhhhhhhhh...hhhhhhhhhhhhhh.....hhhhhhhhhhhhhh......hhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhh..ee.......ee...........eeeehhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhh.hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4kbj B  -6 PRGSHMMLLDVQTDSFEWLIGSPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSEQIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFF 425
                                  ||49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419      
                                  0|                                                                                                                                                                                                                                                                                                                                                                                          
                                  47
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4KBJ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4KBJ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4KBJ)

(-) Gene Ontology  (13, 20)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Gly B:72 - Asp B:73   [ RasMol ]  
    Ser A:88 - Pro A:89   [ RasMol ]  
    Ser B:88 - Pro B:89   [ RasMol ]  
    Ser B:94 - Gly B:95   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RPOB_MYCTO | P9WGY8: 4kbm
        RPOB_MYCTU | P9WGY9: 4kbm 5uh5 5uh6 5uh8 5uh9 5uha 5uhb 5uhc 5uhd 5uhe 5uhf 5uhg

(-) Related Entries Specified in the PDB File

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