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(-) Description

Title :  CRYSTAL STRUCTURE OF A PUTATIVE THIOL-DISULFIDE OXIDOREDUCTASE FROM BACTEROIDES VULGATUS (TARGET NYSGRC-011676), SPACE GROUP P21221
 
Authors :  M. W. Vetting, Y. Patskovsky, R. Toro, R. Bhosle, B. Hillerich, A. Gizzi S. Garforth, A. Kar, M. K. Chan, J. Lafluer, H. Patel, B. Matikainen, S. S. Lim, A. Celikgil, G. Villegas, B. Evans, J. Love, A. Fiser, K. Khafiz R. D. Seidel, J. B. Bonanno, R. N. Armstrong, S. C. Almo, New York Stru Genomics Research Consortium (Nysgrc)
Date :  21 Apr 13  (Deposition) - 22 May 13  (Release) - 29 May 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Putative Disulfide Oxidoreductase, Nysgrc, Structural Genomics, New York Structural Genomics Research Consortium, Psi-Biology, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. W. Vetting, Y. Patskovsky, R. Toro, R. Bhosle, B. Hillerich, A. Gizzi, S. Garforth, A. Kar, M. K. Chan, J. Lafluer, H. Patel, B. Matikainen, S. Chamala, S. Lim, A. Celikgil, G. Villegas, B. Evans, J. Love, A. Fiser, K. Khafizov, R. D. Seidel, J. B. Bonanno, R. N. Armstrong, S. C. Almo, New York Structural Genomics Research Consortium (Nysgrc)
Crystal Structure Of A Putative Thiol-Disulfide Oxidoreductase From Bacteroides Vulgatus (Target Nysgrc-011676), Space Group P21221
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE THIOL-DISULFIDE OXIDOREDUCTASE
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 299-455
    Gene: BVU_2222
    Organism Scientific: BACTEROIDES VULGATUS
    Organism Taxid: 435590
    Strain: ATCC 8482

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN B:139 , ALA B:140 , TYR B:141 , HOH B:344 , ASN D:139BINDING SITE FOR RESIDUE CL B 201

(-) SS Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1A:59 -A:62
2B:59 -B:62
3C:59 -C:62
4D:59 -D:62

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Ile A:125 -Pro A:126
2Ile B:125 -Pro B:126
3Ile C:125 -Pro C:126
4Ile D:125 -Pro D:126

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4KA0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4KA0)

(-) Exons   (0, 0)

(no "Exon" information available for 4KA0)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:143
                                                                                                                                                                               
               SCOP domains d4ka0a_ A: automated matches                                                                                                                    SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhh........eeee....eee.hhhh..eeeeeee...hhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhh......ee..hhhhhh........eeeee.....eee.......hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ka0 A  18 ASKLLPGQPAIDFEMLDVEGNVKHLADFKGKVIYIDLWATWCGPCIQESPAFEALGKKYVGKDIVFLPVSTDTTTKPWLRYLDGHKKELTQYHSNDVALKESWAIMYIPRFILIDKDFNIVNAYAPRPSSEEIGTLIDSVLNK 160
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157   


Chain B from PDB  Type:PROTEIN  Length:140
                                                                                                                                                                            
               SCOP domains d4ka0b_ B: automated matches                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eeee....eee.hhhh..eeeeeee...hhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhh......ee..hhhhhhh.......eeeee.....eee.........hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ka0 B  19 SKLLPGQPAIDFEMLDVEGNVKHLADFKGKVIYIDLWATWCGPCIQESPAFEALGKKYVGKDIVFLPVSTDTTTKPWLRYLDGHKKELTQYHSNDVALKESWAIMYIPRFILIDKDFNIVNAYAPRPSSEEIGTLIDSVL 158
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158


Chain C from PDB  Type:PROTEIN  Length:141
                                                                                                                                                                             
               SCOP domains d4ka0c_ C: automated matches                                                                                                                  SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhh........eeee....eee.hhhh..eeeeeee...hhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhh......ee..hhhhhhh.......eeeee.....eee.......hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ka0 C  18 ASKLLPGQPAIDFEMLDVEGNVKHLADFKGKVIYIDLWATWCGPCIQESPAFEALGKKYVGKDIVFLPVSTDTTTKPWLRYLDGHKKELTQYHSNDVALKESWAIMYIPRFILIDKDFNIVNAYAPRPSSEEIGTLIDSVL 158
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157 


Chain D from PDB  Type:PROTEIN  Length:141
                                                                                                                                                                             
               SCOP domains d4ka0d_ D: automated matches                                                                                                                  SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhh........eeee....eee.hhhh..eeeeeee...hhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhh......ee...hhhhhh.......eeeee.....eee.......hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ka0 D  18 ASKLLPGQPAIDFEMLDVEGNVKHLADFKGKVIYIDLWATWCGPCIQESPAFEALGKKYVGKDIVFLPVSTDTTTKPWLRYLDGHKKELTQYHSNDVALKESWAIMYIPRFILIDKDFNIVNAYAPRPSSEEIGTLIDSVL 158
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4KA0)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4KA0)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        A6L2G8_BACV8 | A6L2G8: 4k9z

(-) Related Entries Specified in the PDB File

4k9z