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(-) Description

Title :  CRYSTAL STRUCTURE OF A PUTATIVE THIOL-DISULFIDE OXIDOREDUCTASE FROM BACTEROIDES VULGATUS (TARGET NYSGRC-011676), SPACE GROUP P6222
 
Authors :  M. W. Vetting, Y. Patskovsky, R. Toro, R. Bhosle, B. Hillerich, A. Gizzi S. Garforth, A. Kar, M. K. Chan, J. Lafluer, H. Patel, B. Matikainen, S. S. Lim, A. Celikgil, G. Villegas, B. Evans, J. Love, A. Fiser, K. Khafiz R. D. Seidel, J. B. Bonanno, R. N. Armstrong, S. C. Almo, New York Stru Genomics Research Consortium (Nysgrc)
Date :  21 Apr 13  (Deposition) - 10 Jul 13  (Release) - 10 Jul 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (4x)
Keywords :  Putative Disulfide Oxidoreductase, Nysgrc, Structural Genomics, New York Structural Genomics Research Consortium, Psi-Biology, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. W. Vetting, Y. Patskovsky, R. Toro, R. Bhosle, B. Hillerich, A. Gizzi, S. Garforth, A. Kar, M. K. Chan, J. Lafluer, H. Patel, B. Matikainen, S. Chamala, S. Lim, A. Celikgil, G. Villegas, B. Evans, J. Love, A. Fiser, K. Khafizov, R. D. Seidel, J. B. Bonanno, R. N. Armstrong, S. C. Almo, New York Structural Genomics Research Consortium (Nysgrc)
Crystal Structure Of A Putative Thiol-Disulfide Oxidoreductase From Bacteroides Vulgatus (Target Nysgrc-011676), Space Group P6222
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE THIOL-DISULFIDE OXIDOREDUCTASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 299-455
    Gene: BVU_2222
    Organism Scientific: BACTEROIDES VULGATUS
    Organism Taxid: 435590
    Strain: ATCC 8482

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (4x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:121 , ILE A:122 , MET A:123 , TYR A:124 , ARG A:127 , GLU A:148BINDING SITE FOR RESIDUE CL A 201

(-) SS Bonds  (1, 1)

Asymmetric Unit
No.Residues
1A:59 -A:62

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Ile A:125 -Pro A:126

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4K9Z)

(-) PROSITE Motifs  (0, 0)

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(-) Sequences/Alignments

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Chain A from PDB  Type:PROTEIN  Length:141
                                                                                                                                                                             
               SCOP domains d4k9za_ A: automated matches                                                                                                                  SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eee.....eee.hhhh..eeeeeee...hhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhh......ee..hhhhhhh.......eeeee.....eee.........hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4k9z A  18 ASKLLPGQPAIDFEMLDVEGNVKHLADFKGKVIYIDLWATWCGPCIQESPAFEALGKKYVGKDIVFLPVSTDTTTKPWLRYLDGHKKELTQYHSNDVALKESWAIMYIPRFILIDKDFNIVNAYAPRPSSEEIGTLIDSVL 158
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157
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 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4K9Z)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4K9Z)

(-) Gene Ontology  (2, 2)

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 Related Entries

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UniProtKB/TrEMBL
        A6L2G8_BACV8 | A6L2G8: 4ka0

(-) Related Entries Specified in the PDB File

4ka0