4K4Y - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Title :   COXSACKIEVIRUS B3 POLYMERASE ELONGATION COMPLEX (R2+1_FORM)

Authors :   P. Gong, O. B. Peersen

Date :   12 Apr 13 (Deposition) - 29 May 13 (Release) - 20 May 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.72

Chains :   Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1: A,B,C,D  (1x)
Biol. Unit 2: E,F,G,H  (1x)
Biol. Unit 3: I,J,K,L  (1x)
Biol. Unit 4: M,N,O,P  (1x)

Keywords :   Polymerase, Rna-Dependent Rna Polymerase, Protein-Rna Complex, Transferase-Rna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   P. Gong, M. G. Kortus, J. C. Nix, R. E. Davis, O. B. Peersen
Structures Of Coxsackievirus, Rhinovirus, And Poliovirus Polymerase Elongation Complexes Solved By Engineering Rna Mediated Crystal Contacts.
Plos One V. 8 60272 2013
PubMed-ID: 23667424 | Reference-DOI: 10.1371/JOURNAL.PONE.0060272

Molecule 1 - RNA-DEPENDENT RNA POLYMERASE
	Chains	:	A, E, I, M
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Organism Scientific	:	HUMAN COXSACKIEVIRUS B3
	Organism Taxid	:	12072

*Molecule 2 - RNA (5'- R(APAPGPUPCPUPCPCPAPGPGPUPCPUPCPUPCPGPUPCPGPAP APA)-3')*
	Chains	:	B, F, J, N
	Engineered	:	YES
	Synthetic	:	YES

*Molecule 3 - DNA/RNA (5'- R(UPGPUPUPCPGPAPCPGPAPGPAPGPAP(DOC))-3')**
	Chains	:	C, G, K, O
	Engineered	:	YES
	Synthetic	:	YES

*Molecule 4 - RNA (5'-R(GPGPGPAPGPAPUPGPA)-3')**
	Chains	:	D, H, L, P
	Engineered	:	YES
	Synthetic	:	YES

		1	2	3	4	5	6	7	8	9	10	11	12	13	14	15	16
Asymmetric Unit	:	A	B	C	D	E	F	G	H	I	J	K	L	M	N	O	P
Biological Unit 1 (1x)	:	A	B	C	D
Biological Unit 2 (1x)	:					E	F	G	H
Biological Unit 3 (1x)	:									I	J	K	L
Biological Unit 4 (1x)	:													M	N	O	P

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 23)

No.	Name	Count	Type	Full Name
1	ACT	3	Ligand/Ion	ACETATE ION
2	DCT	4	Ligand/Ion	2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE
3	DOC	4	Mod. Nucleotide	2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE
4	GOL	12	Ligand/Ion	GLYCEROL

Biological Unit 1 (4, 6)

No.	Name	Count	Type	Full Name
1	ACT	1	Ligand/Ion	ACETATE ION
2	DCT	1	Ligand/Ion	2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE
3	DOC	1	Mod. Nucleotide	2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE
4	GOL	3	Ligand/Ion	GLYCEROL

Biological Unit 2 (4, 6)

No.	Name	Count	Type	Full Name
1	ACT	1	Ligand/Ion	ACETATE ION
2	DCT	1	Ligand/Ion	2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE
3	DOC	1	Mod. Nucleotide	2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE
4	GOL	3	Ligand/Ion	GLYCEROL

Biological Unit 3 (4, 6)

No.	Name	Count	Type	Full Name
1	ACT	1	Ligand/Ion	ACETATE ION
2	DCT	1	Ligand/Ion	2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE
3	DOC	1	Mod. Nucleotide	2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE
4	GOL	3	Ligand/Ion	GLYCEROL

Biological Unit 4 (3, 5)

No.	Name	Count	Type	Full Name
1	ACT	-1	Ligand/Ion	ACETATE ION
2	DCT	1	Ligand/Ion	2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE
3	DOC	1	Mod. Nucleotide	2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE
4	GOL	3	Ligand/Ion	GLYCEROL

Asymmetric Unit (19, 19)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	LYS A:159 , ARG A:163 , LYS A:167 , ARG A:174 , TYR A:234 , GLY A:236 , ASP A:329 , GOL A:505 , HOH A:680 , G B:600 , G B:601 , DOC C:701	BINDING SITE FOR RESIDUE DCT A 501
02	AC2	SOFTWARE	LYS A:96 , LEU A:97 , GLU A:98	BINDING SITE FOR RESIDUE ACT A 502
03	AC3	SOFTWARE	MET A:154 , SER A:179 , ASP A:183 , TYR A:268 , LEU A:269 , CYS A:291 , SER A:292 , HOH A:678	BINDING SITE FOR RESIDUE GOL A 503
04	AC4	SOFTWARE	GLU A:7 , LYS M:250 , ASP M:267 , CYS M:270 , ASN M:271 , HOH M:4247	BINDING SITE FOR RESIDUE GOL A 504
05	AC5	SOFTWARE	ARG A:163 , SER A:164 , LYS A:167 , DCT A:501	BINDING SITE FOR RESIDUE GOL A 505
06	AC6	SOFTWARE	LYS E:159 , ARG E:163 , LYS E:167 , ARG E:174 , GLY E:236 , ASP E:329 , GOL E:502 , HOH E:4269 , G F:600 , G F:601 , DOC G:701	BINDING SITE FOR RESIDUE DCT E 501
07	AC7	SOFTWARE	ARG E:163 , SER E:164 , LYS E:167 , DCT E:501 , HOH E:4201	BINDING SITE FOR RESIDUE GOL E 502
08	AC8	SOFTWARE	LYS E:96 , LEU E:97 , GLU E:98 , LEU E:138	BINDING SITE FOR RESIDUE ACT E 503
09	AC9	SOFTWARE	MET E:154 , SER E:179 , ASP E:183 , TYR E:268 , CYS E:291 , SER E:292	BINDING SITE FOR RESIDUE GOL E 504
10	BC1	SOFTWARE	ALA E:247 , ASP E:267 , CYS E:270 , ASN E:271 , HOH E:4243 , GLU I:7	BINDING SITE FOR RESIDUE GOL E 505
11	BC2	SOFTWARE	LYS I:159 , ARG I:163 , LYS I:167 , ARG I:174 , TYR I:234 , GLY I:236 , ASP I:329 , GOL I:502 , G J:600 , G J:601 , DOC K:701	BINDING SITE FOR RESIDUE DCT I 501
12	BC3	SOFTWARE	ARG I:163 , SER I:164 , LYS I:167 , DCT I:501	BINDING SITE FOR RESIDUE GOL I 502
13	BC4	SOFTWARE	LYS I:96 , LEU I:97 , GLU I:98	BINDING SITE FOR RESIDUE ACT I 503
14	BC5	SOFTWARE	MET I:154 , SER I:179 , ASP I:183 , MET I:187 , TYR I:268 , LEU I:269 , CYS I:291 , SER I:292	BINDING SITE FOR RESIDUE GOL I 504
15	BC6	SOFTWARE	GLU E:7 , PRO I:243 , LYS I:250 , ASP I:267 , CYS I:270 , ASN I:271 , HOH I:1151	BINDING SITE FOR RESIDUE GOL I 505
16	BC7	SOFTWARE	LYS M:159 , ARG M:163 , LYS M:167 , ARG M:174 , TYR M:234 , GLY M:236 , ASP M:329 , GOL M:502 , HOH M:4201 , G N:600 , G N:601 , DOC O:701 , HOH O:905	BINDING SITE FOR RESIDUE DCT M 501
17	BC8	SOFTWARE	ARG M:163 , SER M:164 , LYS M:167 , DCT M:501	BINDING SITE FOR RESIDUE GOL M 502
18	BC9	SOFTWARE	MET M:154 , SER M:179 , ASP M:183 , MET M:187 , LEU M:269 , CYS M:291 , SER M:292	BINDING SITE FOR RESIDUE GOL M 503
19	CC1	SOFTWARE	LYS A:250 , ASP A:267 , CYS A:270 , ASN A:271 , GLU M:7	BINDING SITE FOR RESIDUE GOL M 504

(no "SS Bond" information available for 4K4Y)

Asymmetric Unit

No.	Residues
1	Tyr A:118	-	Pro A:119
2	Tyr E:118	-	Pro E:119
3	Tyr I:118	-	Pro I:119
4	Tyr M:118	-	Pro M:119

(no "SAP(SNP)/Variant" information available for 4K4Y)

(no "PROSITE Motif" information available for 4K4Y)

(no "Exon" information available for 4K4Y)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:463
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains d4k4ya_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                    SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.hhhh............ee...........ee............hhhhhhhh..........hhhhhhhhhhhhhhhh.........hhhhhhhh...............hhhhhh.hhhhhh......hhhhhhhhhhhh....eeeee...eehhhhhhh....eeee.hhhhhhhhhhhhhhhhhhhhh............hhhhhh.hhhhhh..eee.eee.hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhheeeeee..eeeeee........hhhhhhhhhhhhhhhhhhhhhh...hhhhheeeee..eeeeee....hhhhhhhhhhhh...eee...............ee..eeeee.......eeee.hhhhhhhhhhee.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh..hhhhh...hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4k4y A   1 GEIEFIESSKDAGFPVINTPSKTKLEPSVFHQVFEGNKEPAVLRSGDPRLKANFEEAIFSKYIGNVNTHVDEYMLEAVDHYAGQLATLDISTEPMKLEDAVYGTEGLEALDLTTSAGYPYVALGIKKRDILSKKTKDLTKLKECMDKYGLNLPMVTYVKDELRSIEKVAKGKSRLIEASSLNDSVAMRQTFGNLYKTFHLNPGVVTGSAVGCDPDLFWSKIPVMLDGHLIAFDYSGYDASLSPVWFACLKMILEKLGYTHKETNYIDYLCNSHHLYRDKHYFVRGGMPSGCSGTSIFNSMINNIIIRTLMLKVYKGIDLDQFRMIAYGDDVIASYPWPIDASLLAEAGKGYGLIMTPADKGECFNEVTWTNVTFLKRYFRADEQYPFLVHPVMPMKDIHESIRWTKDPKNTQDHVRSLCLLAWHNGEHEYEEFIRKIRSVPVGRCLTLPAFSTLRRKWLDSFG 463
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460

Chain B from PDB  Type:RNA  Length:18
                                                  
                 4k4y B 595 CUCCAGGUCUCUCGUCGA 612
                                   604

Chain C from PDB  Type:DNA/RNA  Length:12
                                            
                 4k4y C 690 UCGACGAGAGAc 701
                                   699 |
                                     701-DOC

Chain D from PDB  Type:RNA  Length:5
                                     
                 4k4y D 803 GGAGA 807

Chain E from PDB  Type:PROTEIN  Length:463
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains d4k4ye_ E: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                    SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.................ee...........ee............hhhhhhhh..........hhhhhhhhhhhhhhhhhhh......hhhhhhhh...............hhhhh..hhhhhh......hhhhhhhhhhhh....eeeee...eehhhhhhh....eeee.hhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhh..eee.eee.hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhheeeeee..eeeeee........hhhhhhhhhhhhhhhhhhhhhh...hhhhheeeee..eeeeee....hhhhhhhhhhhh...eee...............ee..eeeee.......eeee.hhhhhhhhhhee.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh..hhhhh...hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4k4y E   1 GEIEFIESSKDAGFPVINTPSKTKLEPSVFHQVFEGNKEPAVLRSGDPRLKANFEEAIFSKYIGNVNTHVDEYMLEAVDHYAGQLATLDISTEPMKLEDAVYGTEGLEALDLTTSAGYPYVALGIKKRDILSKKTKDLTKLKECMDKYGLNLPMVTYVKDELRSIEKVAKGKSRLIEASSLNDSVAMRQTFGNLYKTFHLNPGVVTGSAVGCDPDLFWSKIPVMLDGHLIAFDYSGYDASLSPVWFACLKMILEKLGYTHKETNYIDYLCNSHHLYRDKHYFVRGGMPSGCSGTSIFNSMINNIIIRTLMLKVYKGIDLDQFRMIAYGDDVIASYPWPIDASLLAEAGKGYGLIMTPADKGECFNEVTWTNVTFLKRYFRADEQYPFLVHPVMPMKDIHESIRWTKDPKNTQDHVRSLCLLAWHNGEHEYEEFIRKIRSVPVGRCLTLPAFSTLRRKWLDSFG 463
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460

Chain F from PDB  Type:RNA  Length:17
                                                 
                 4k4y F 596 UCCAGGUCUCUCGUCGA 612
                                   605

Chain G from PDB  Type:DNA/RNA  Length:12
                                            
                 4k4y G 690 UCGACGAGAGAc 701
                                   699 |
                                     701-DOC

Chain H from PDB  Type:RNA  Length:5
                                     
                 4k4y H 803 GGAGA 807

Chain I from PDB  Type:PROTEIN  Length:463
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains d4k4yi_ I: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                    SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.hhhh............ee...........ee............hhhhhhhh..........hhhhhhhhhhhhhhhhhhh......hhhhhhhh...............hhhhh..hhhhhh......hhhhhhhhhhhh....eeeee...eehhhhhhh....eeee.hhhhhhhhhhhhhhhhhhhhh............hhhhhh.hhhhhh..eee.eee.hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhheeeeee..eeeeee........hhhhhhhhhhhhhhhhhhhhhh...hhhhheeeee..eeeeee....hhhhhhhhhhhh...eee...............ee..eeeee.......eeee.hhhhhhhhhhee.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh..hhhhh...hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4k4y I   1 GEIEFIESSKDAGFPVINTPSKTKLEPSVFHQVFEGNKEPAVLRSGDPRLKANFEEAIFSKYIGNVNTHVDEYMLEAVDHYAGQLATLDISTEPMKLEDAVYGTEGLEALDLTTSAGYPYVALGIKKRDILSKKTKDLTKLKECMDKYGLNLPMVTYVKDELRSIEKVAKGKSRLIEASSLNDSVAMRQTFGNLYKTFHLNPGVVTGSAVGCDPDLFWSKIPVMLDGHLIAFDYSGYDASLSPVWFACLKMILEKLGYTHKETNYIDYLCNSHHLYRDKHYFVRGGMPSGCSGTSIFNSMINNIIIRTLMLKVYKGIDLDQFRMIAYGDDVIASYPWPIDASLLAEAGKGYGLIMTPADKGECFNEVTWTNVTFLKRYFRADEQYPFLVHPVMPMKDIHESIRWTKDPKNTQDHVRSLCLLAWHNGEHEYEEFIRKIRSVPVGRCLTLPAFSTLRRKWLDSFG 463
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460

Chain J from PDB  Type:RNA  Length:18
                                                  
                 4k4y J 595 CUCCAGGUCUCUCGUCGA 612
                                   604

Chain K from PDB  Type:DNA/RNA  Length:12
                                            
                 4k4y K 690 UCGACGAGAGAc 701
                                   699 |
                                     701-DOC

Chain L from PDB  Type:RNA  Length:5
                                     
                 4k4y L 803 GGAGA 807

Chain M from PDB  Type:PROTEIN  Length:463
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains d4k4ym_ M: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                    SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.hhhh............ee...........ee............hhhhhhhh..........hhhhhhhhhhhhhhhhhhh......hhhhhhhh...............hhhhh..hhhhhh......hhhhhhhhhhhh....eeeee...eehhhhhhh....eeee.hhhhhhhhhhhhhhhhhhhhh............hhhhhh.hhhhhh..eee.eee.hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhheeeeee..eeeeee........hhhhhhhhhhhhhhhhhhhhhh...hhhhheeeee..eeeeee....hhhhhhhhhhhh...eee...............ee..eeeee.......eeee.hhhhhhhhhhee.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh..hhhhh...hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4k4y M   1 GEIEFIESSKDAGFPVINTPSKTKLEPSVFHQVFEGNKEPAVLRSGDPRLKANFEEAIFSKYIGNVNTHVDEYMLEAVDHYAGQLATLDISTEPMKLEDAVYGTEGLEALDLTTSAGYPYVALGIKKRDILSKKTKDLTKLKECMDKYGLNLPMVTYVKDELRSIEKVAKGKSRLIEASSLNDSVAMRQTFGNLYKTFHLNPGVVTGSAVGCDPDLFWSKIPVMLDGHLIAFDYSGYDASLSPVWFACLKMILEKLGYTHKETNYIDYLCNSHHLYRDKHYFVRGGMPSGCSGTSIFNSMINNIIIRTLMLKVYKGIDLDQFRMIAYGDDVIASYPWPIDASLLAEAGKGYGLIMTPADKGECFNEVTWTNVTFLKRYFRADEQYPFLVHPVMPMKDIHESIRWTKDPKNTQDHVRSLCLLAWHNGEHEYEEFIRKIRSVPVGRCLTLPAFSTLRRKWLDSFG 463
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460

Chain N from PDB  Type:RNA  Length:17
                                                 
                 4k4y N 596 UCCAGGUCUCUCGUCGA 612
                                   605

Chain O from PDB  Type:DNA/RNA  Length:12
                                            
                 4k4y O 690 UCGACGAGAGAc 701
                                   699 |
                                     701-DOC

Chain P from PDB  Type:RNA  Length:5
                                     
                 4k4y P 803 GGAGA 807

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Multi-domain proteins (alpha and beta) (2421)

Fold: DNA/RNA polymerases (850)

Superfamily: DNA/RNA polymerases (850)

Family: RNA-dependent RNA-polymerase (253)

Protein domain: automated matches (100)

Human coxsackievirus B3 [TaxId: 12072] (3)

1a	d4k4ya_	A:
1b	d4k4yi_	I:
1c	d4k4ym_	M:
1d	d4k4ye_	E:

(no "CATH Domain" information available for 4K4Y)

(no "Pfam Domain" information available for 4K4Y)

Asymmetric Unit(hide GO term definitions)

Asymmetric Unit
	Complete Structure
		Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
		WebMol \| AstexViewer[tm]@PDBe (Java Applets, require no local installation except for Java; loading may be slow)
		STRAP (Java WebStart application, automatic local installation, requires Java; full application with system access!)
		RasMol (require local installation)
		Molscript (VRML) (requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)

	Ligands, Modified Residues, Ions
		ACT	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		DCT	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		DOC	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		GOL	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]
		AC5	[ RasMol ]	+environment [ RasMol ]
		AC6	[ RasMol ]	+environment [ RasMol ]
		AC7	[ RasMol ]	+environment [ RasMol ]
		AC8	[ RasMol ]	+environment [ RasMol ]
		AC9	[ RasMol ]	+environment [ RasMol ]
		BC1	[ RasMol ]	+environment [ RasMol ]
		BC2	[ RasMol ]	+environment [ RasMol ]
		BC3	[ RasMol ]	+environment [ RasMol ]
		BC4	[ RasMol ]	+environment [ RasMol ]
		BC5	[ RasMol ]	+environment [ RasMol ]
		BC6	[ RasMol ]	+environment [ RasMol ]
		BC7	[ RasMol ]	+environment [ RasMol ]
		BC8	[ RasMol ]	+environment [ RasMol ]
		BC9	[ RasMol ]	+environment [ RasMol ]
		CC1	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Tyr A:118 - Pro A:119	[ RasMol ]
		Tyr E:118 - Pro E:119	[ RasMol ]
		Tyr I:118 - Pro I:119	[ RasMol ]
		Tyr M:118 - Pro M:119	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]
		Biological Unit 3	[ Jena3D ]
		Biological Unit 4	[ Jena3D ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym. Unit PNG format \| Asym. Unit - sites PNG format \| Biol. Unit 1 PNG format \| Biol. Unit 1 - sites PNG format \| Biol. Unit 2 PNG format \| Biol. Unit 3 PNG format \| Biol. Unit 4 PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Access by PDB/NDB ID
	4k4y
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	Q5UEA2_9ENTO \| Q5UEA2
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/TrEMBL
	Q66338_9ENTO \| Q66338
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

Access by Enzyme Classificator (EC Number)
	(no 'Enzyme Classificator' available)
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

Access by GenAge ID
	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	Q5UEA2_9ENTO \| Q5UEA2
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)
	Q66338_9ENTO \| Q66338
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 23)

Sites (19, 19)

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 4)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (36, 72)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File