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(-) Description

Title :  CRYSTAL STRUCTURE OF RIALPHA(91-379) BOUND TO HE33, A N6 DI-PROPYL SUBSTITUTED CAMP ANALOG
 
Authors :  S. H. J. Brown, C. Y. Cheng, A. S. Saldanha, J. Wu, H. Cottam, B. Sankaran, S. S. Taylor
Date :  25 Mar 13  (Deposition) - 18 Sep 13  (Release) - 30 Oct 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.95
Chains :  Asym./Biol. Unit :  A
Keywords :  Camp-Dependent Protein Kinase, Cyclic Nucleotide Analogs, Isoform Selectivity, Fluorescence Anisotropy, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. H. Brown, C. Y. Cheng, S. A. Saldanha, J. Wu, H. B. Cottam, B. Sankaran S. S. Taylor
Implementing Fluorescence Anisotropy Screening And Crystallographic Analysis To Define Pka Isoform-Selective Activation By Camp Analogs.
Acs Chem. Biol. V. 8 2164 2013
PubMed-ID: 23978166  |  Reference-DOI: 10.1021/CB400247T

(-) Compounds

Molecule 1 - CAMP-DEPENDENT PROTEIN KINASE TYPE I-ALPHA REGULATORY SUBUNIT
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PRSET
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: RIALPHA (93-380)
    Gene: PRKAR1A
    Mutation: YES
    Organism Common: BOVINE,COW,DOMESTIC CATTLE,DOMESTIC COW
    Organism Scientific: BOS TAURUS
    Organism Taxid: 9913

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
11OR2Ligand/Ion(2R,4AR,6R,7R,7AS)-6-[6-(DIPROPYLAMINO)-9H-PURIN-9-YL]TETRAHYDRO-4H-FURO[3,2-D][1,3,2]DIOXAPHOSPHININE-2,7-DIOL 2-OXIDE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:190 , GLY A:199 , GLU A:200 , LEU A:201 , ALA A:202 , ARG A:209 , ALA A:210 , ALA A:211 , ASP A:258 , TRP A:260BINDING SITE FOR RESIDUE 1OR A 401
2AC2SOFTWAREVAL A:281 , VAL A:313 , PHE A:322 , GLY A:323 , GLU A:324 , ILE A:325 , ALA A:326 , ARG A:333 , ALA A:334 , ALA A:335 , TYR A:371BINDING SITE FOR RESIDUE 1OR A 402

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4JV4)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Asp A:107 -Ala A:108

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4JV4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4JV4)

(-) Exons   (0, 0)

(no "Exon" information available for 4JV4)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:261
                                                                                                                                                                                                                                                                                                     
               SCOP domains d4jv4a1 A:107-244 Regulatory subunit of Protein kinase A                                                                                  d4jv4a2 A:245-373 Regulatory subunit of Protein kinase A                                                                    SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhheeeee....eee.......eeeeeee..eeeee..eeeeee....ee.hhhhhh......eeee...eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhheeeee..eeeee.........eeeeeeeeeee....eeeee....ee.hhhhhh......eeeeeeeeeeee.hhhhhhhhh..hhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jv4 A 107 DAASYVRKVIPKDYKTMAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEWATSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRFVEVGRLGPSDYFGEIALLMNRPRAATVVARGPLKCVKLDRPRFERVLGPCSDILKRNIQQYNS 373
                                   116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296      |312       322       332       342       352       362       372 
                                                                                                                                                                                                                              303|                                                               
                                                                                                                                                                                                                               310
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4JV4)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4JV4)

(-) Gene Ontology  (23, 23)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        KAP0_BOVIN | P00514: 1apk 1bpk 1ne4 1ne6 1pvk 1rgs 1rl3 2ezw 2qcs 3fhi 3iia 3im3 3im4 3plq 3pna 3pvb 4mx3 4x6r 5hvz 5jr7

(-) Related Entries Specified in the PDB File

1ne4 CRYSTAL STRUCTURE OF RIALPHA (91-379) BOUND TO RP-CAMP ANALOG
1ne6 CRYSTAL STRUCTURE OF RIALPHA (91-379) BOUND TO SP-CAMP ANALOG
1rgs CRYSTAL STRUCTURE OF RIALPHA (91-379) BOUND TO CAMP