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(-) Description

Title :  PREDICTED STRUCTURES OF CAMP BINDING DOMAINS OF TYPE I AND II REGULATORY SUBUNITS OF CAMP-DEPENDENT PROTEIN KINASE
 
Authors :  I. T. Weber
Date :  14 Mar 89  (Deposition) - 15 Apr 90  (Release) - 15 Oct 94  (Revision)
Method :  THEORETICAL MODEL
Resolution :  NOT APPLICABLE
Chains :  Theor. Model :  A,_#
#:   chains that contain no standard or modified protein/DNA/RNA residue)
 
Keywords :  Phosphotransferase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  I. T. Weber, T. A. Steitz, J. Bubis, S. S. Taylor
Predicted Structures Of Camp Binding Domains Of Type I And Ii Regulatory Subunits Of Camp-Dependent Protein Kinase.
Biochemistry V. 26 343 1987
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - CAMP-DEPENDENT PROTEIN KINASE TYPE I-ALPHA REGULATORY CHAIN
    ChainsA
    EC Number2.7.1.37
    EngineeredYES

 Structural Features

(-) Chains, Units

  
Theoretical Model 
#:   chains that contain no standard or modified protein/DNA/RNA residue)
 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Theoretical Model (1, 1)
No.NameCountTypeFull Name
1CMP1Ligand/IonADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE

(-) Sites  (0, 0)

(no "Site" information available for 1APK)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1APK)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1APK)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1APK)

(-) PROSITE Motifs  (3, 3)

Theoretical Model (3, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CNMP_BINDING_3PS50042 cAMP/cGMP binding motif profile.KAP0_BOVIN136-251
254-375
  1-
A:253-260
2CNMP_BINDING_1PS00888 Cyclic nucleotide-binding domain signature 1.KAP0_BOVIN163-179
281-297
  1A:162-178
-
3CNMP_BINDING_2PS00889 Cyclic nucleotide-binding domain signature 2.KAP0_BOVIN199-216
323-340
  1A:198-215
-

(-) Exons   (6, 6)

Theoretical Model (6, 6)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENSBTAT000000113711ENSBTAE00000313083chr19:63667746-63667642105KAP0_BOVIN-00--
1.2ENSBTAT000000113712ENSBTAE00000092376chr19:63665339-63665143197KAP0_BOVIN1-59590--
1.3ENSBTAT000000113713ENSBTAE00000092377chr19:63660511-63660341171KAP0_BOVIN60-116570--
1.4ENSBTAT000000113714ENSBTAE00000092378chr19:63659532-6365944192KAP0_BOVIN117-147311A:143-1464
1.5ENSBTAT000000113715ENSBTAE00000092380chr19:63659241-6365918062KAP0_BOVIN147-168221A:146-16722
1.6ENSBTAT000000113716ENSBTAE00000092381chr19:63658431-6365838547KAP0_BOVIN168-183161A:167-18216
1.7ENSBTAT000000113717ENSBTAE00000092382chr19:63657530-63657372159KAP0_BOVIN184-236531A:183-23553
1.8ENSBTAT000000113718ENSBTAE00000092383chr19:63656713-6365665361KAP0_BOVIN237-257211A:236-25621
1.9ENSBTAT000000113719ENSBTAE00000092384chr19:63655618-63655497122KAP0_BOVIN257-297411A:256-2605
1.10ENSBTAT0000001137110ENSBTAE00000092385chr19:63654637-6365455682KAP0_BOVIN298-325280--
1.11ENSBTAT0000001137111ENSBTAE00000092386chr19:63654278-63653922357KAP0_BOVIN325-381570--

(-) Sequences/Alignments

Theoretical Model
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:118
 aligned with KAP0_BOVIN | P00514 from UniProtKB/Swiss-Prot  Length:380

    Alignment length:118
                                   153       163       173       183       193       203       213       223       233       243       253        
           KAP0_BOVIN   144 ERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEWATSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMYEEFLSKVSILESLDKW 261
               SCOP domains ---------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhh...eeeee...eeeeee.eeeeeeeee....eeeeee.eeeeeee...eee.......eeeeeeeee.eeeeeeeeehhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) CNMP_BINDING_3  PDB: - UniProt: 136-251                                                                     --CNMP_BIN PROSITE (1)
                PROSITE (2) -------------------CNMP_BINDING_1   -------------------CNMP_BINDING_2    --------------------------------------------- PROSITE (2)
           Transcript 1 (1) 1.4 --------------------Exon 1.6        Exon 1.7  PDB: A:183-235 UniProt: 184-236            Exon 1.8             ---- Transcript 1 (1)
           Transcript 1 (2) ---Exon 1.5              ----------------------------------------------------------------------------------------1.9   Transcript 1 (2)
                 1apk A 143 ERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEWATSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMYEEFLSKVSILESLDKW 260
                                   152       162       172       182       192       202       212       222       232       242       252        

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1APK)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1APK)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1APK)

(-) Gene Ontology  (23, 23)

Theoretical Model(hide GO term definitions)
Chain A   (KAP0_BOVIN | P00514)
molecular function
    GO:0030552    cAMP binding    Interacting selectively and non-covalently with cAMP, the nucleotide cyclic AMP (adenosine 3',5'-cyclophosphate).
    GO:0004862    cAMP-dependent protein kinase inhibitor activity    Stops, prevents or reduces the activity of a cAMP-dependent protein kinase.
    GO:0008603    cAMP-dependent protein kinase regulator activity    Modulation of the activity of the enzyme cAMP-dependent protein kinase.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0034236    protein kinase A catalytic subunit binding    Interacting selectively and non-covalently with one or both of the catalytic subunits of protein kinase A.
    GO:0031625    ubiquitin protein ligase binding    Interacting selectively and non-covalently with a ubiquitin protein ligase enzyme, any of the E3 proteins.
biological process
    GO:0060038    cardiac muscle cell proliferation    The expansion of a cardiac muscle cell population by cell division.
    GO:0007507    heart development    The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood.
    GO:0001707    mesoderm formation    The process that gives rise to the mesoderm. This process pertains to the initial formation of the structure from unspecified parts.
    GO:0046007    negative regulation of activated T cell proliferation    Any process that stops, prevents or reduces the rate or extent of activated T cell proliferation.
    GO:2000480    negative regulation of cAMP-dependent protein kinase activity    Any process that stops, prevents or reduces the frequency, rate or extent of cAMP-dependent protein kinase activity.
    GO:0006469    negative regulation of protein kinase activity    Any process that stops, prevents, or reduces the frequency, rate or extent of protein kinase activity.
    GO:0001932    regulation of protein phosphorylation    Any process that modulates the frequency, rate or extent of addition of phosphate groups into an amino acid in a protein.
    GO:0045214    sarcomere organization    The myofibril assembly process that results in the organization of muscle actomyosin into sarcomeres. The sarcomere is the repeating unit of a myofibril in a muscle cell, composed of an array of overlapping thick and thin filaments between two adjacent Z discs.
cellular component
    GO:0005952    cAMP-dependent protein kinase complex    An enzyme complex, composed of regulatory and catalytic subunits, that catalyzes protein phosphorylation. Inactive forms of the enzyme have two regulatory chains and two catalytic chains; activation by cAMP produces two active catalytic monomers and a regulatory dimer.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0001772    immunological synapse    An area of close contact between a lymphocyte (T-, B-, or natural killer cell) and a target cell formed through the clustering of particular signaling and adhesion molecules and their associated membrane rafts on both the lymphocyte and the target cell and facilitating activation of the lymphocyte, transfer of membrane from the target cell to the lymphocyte, and in some situations killing of the target cell through release of secretory granules and/or death-pathway ligand-receptor interaction.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0031594    neuromuscular junction    The junction between the axon of a motor neuron and a muscle fiber. In response to the arrival of action potentials, the presynaptic button releases molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane of the muscle fiber, leading to a change in post-synaptic potential.
    GO:0031588    nucleotide-activated protein kinase complex    A protein complex that possesses nucleotide-dependent protein kinase activity. The nucleotide can be AMP (in S. pombe and human) or ADP (in S. cerevisiae).
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
    GO:0044853    plasma membrane raft    A membrane raft that is part of the plasma membrane.
    GO:0043234    protein complex    A stable macromolecular complex composed (only) of two or more polypeptide subunits along with any covalently attached molecules (such as lipid anchors or oligosaccharide) or non-protein prosthetic groups (such as nucleotides or metal ions). Prosthetic group in this context refers to a tightly bound cofactor. The component polypeptide subunits may be identical.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        KAP0_BOVIN | P005141bpk 1ne4 1ne6 1pvk 1rgs 1rl3 2ezw 2qcs 3fhi 3iia 3im3 3im4 3plq 3pna 3pvb 4jv4 4mx3 4x6r 5hvz 5jr7

(-) Related Entries Specified in the PDB File

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