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(-) Description

Title :  STRUCTURE OF PORCINE CYCLIC GMP-AMP SYNTHASE (CGAS)
 
Authors :  F. Civril, K. P. Hopfner
Date :  13 Mar 13  (Deposition) - 12 Jun 13  (Release) - 10 Jul 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A
Keywords :  Dna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Civril, T. Deimling, C. C. O. Mann, A. Ablasser, M. Moldt, G. Witte, V. Hornung, K. P. Hopfner
Structural Mechanism Of Cytosolic Dna Sensing By Cgas
Nature V. 498 332 2013
PubMed-ID: 23722159  |  Reference-DOI: 10.1038/NATURE12305

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 135-495
    Gene: MB21D1
    Organism Common: PIGS,SWINE,WILD BOAR
    Organism Scientific: SUS SCROFA
    Organism Taxid: 9823

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 7)

Asymmetric/Biological Unit (4, 7)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2MLI3Ligand/IonMALONATE ION
3PG42Ligand/IonTETRAETHYLENE GLYCOL
4ZN1Ligand/IonZINC ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:367 , CYS A:373 , CYS A:374 , CYS A:381BINDING SITE FOR RESIDUE ZN A 501
2AC2SOFTWARELEU A:214 , PRO A:308 , ALA A:309 , HOH A:698BINDING SITE FOR RESIDUE MLI A 502
3AC3SOFTWAREHIS A:166BINDING SITE FOR RESIDUE GOL A 503
4AC4SOFTWAREGLU A:215BINDING SITE FOR RESIDUE MLI A 504
5AC5SOFTWAREARG A:404 , GLY A:464 , ASN A:466 , SER A:469 , ARG A:470 , PHE A:480 , LYS A:483 , GLN A:484 , MLI A:507BINDING SITE FOR RESIDUE PG4 A 505
6AC6SOFTWAREASP A:426 , ASN A:430 , GLN A:431 , TRP A:432 , HIS A:433 , ASN A:436 , CYS A:439 , CYS A:440 , ASN A:443 , HOH A:654BINDING SITE FOR RESIDUE PG4 A 506
7AC7SOFTWARELYS A:400 , ARG A:470 , ASP A:471 , GLN A:484 , TYR A:487 , PG4 A:505BINDING SITE FOR RESIDUE MLI A 507

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4JLX)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Lys A:289 -Pro A:290

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4JLX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4JLX)

(-) Exons   (0, 0)

(no "Exon" information available for 4JLX)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:351
                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains d4jlxa1 A:135-382 cGAMP synthase, cGAS N-terminal domain                                                                                                                                                                                    d4jlxa2 A:383-497 cGAMP synthase, cGAS C-terminal domain                                                            SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......eee.......eeeeeeeee....eeee......eeeee.........hhh.ee..eehhhhhhhhhhhhhhhhh....eee........eeeee.....eeeeeeeeeee....hhhhh.........hhhhhhhhhh..eeee.........hhhhheeeehhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh..................hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jlx A 135 GAWKLQTVLEKVRLSRHEISEAAEVVNWVVEHLLRRLQGGESEFKGVALLRTGSAPNEFDVMFKLEVPRIQLEEYCNSGAHYFVKFKRNPGGNPLEQFLEKEILSASKMLSKFRKIIKEEIKNTGVTVERKRGSPAVTLLISKPKEISVDIILALESKSSWPASTQKGLPISQWLGAKVKNNLKRQPFYLVPKHAKEGSGFQEETWRLSFSHIEKDILKNHGQSKTCCEIDGVKCCRKECLKLMKYLLEQLKKKFGNRRELAKFCSYHVKTAFFHVCTQDPHDNQWHLKNLECCFDNCVAYFLQCLKTEQLANYFIPGVNLFSRDLIDKPSKEFLSKQIEYERNNGFPVFW 497
                                   144       154       164       174       184  ||   202       212       222       232       242       252       262  ||   275 ||    286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496 
                                                                              187|                                                                  265|     277|                                                                                                                                                                                                                          
                                                                               196                                                                   269      279
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4JLX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4JLX)

(-) Gene Ontology  (17, 17)

Asymmetric/Biological Unit(hide GO term definitions)

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    Lys A:289 - Pro A:290   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CGAS_PIG | I3LM39: 4jlz 4kb6

(-) Related Entries Specified in the PDB File

4jlz