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(-) Description

Title :  STRUCTURE OF PORCINE CGAS IN COMPLEX WITH BOUND UTP
 
Authors :  F. Civril, K. P. Hopfner
Date :  13 Mar 13  (Deposition) - 12 Jun 13  (Release) - 10 Jul 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.27
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Dna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Civril, T. Deimling, C. C. O. Mann, A. Ablasser, M. Moldt, G. Witte, V. Hornung, K. P. Hopfner
Structural Mechanism Of Cytosolic Dna Sensing By Cgas
Nature V. 498 332 2013
PubMed-ID: 23722159  |  Reference-DOI: 10.1038/NATURE12305

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 135-495
    Gene: MB21D1
    Organism Common: PIGS,SWINE,WILD BOAR
    Organism Scientific: SUS SCROFA
    Organism Taxid: 9823

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric Unit (3, 6)
No.NameCountTypeFull Name
1MG2Ligand/IonMAGNESIUM ION
2UTP2Ligand/IonURIDINE 5'-TRIPHOSPHATE
3ZN2Ligand/IonZINC ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION
2UTP1Ligand/IonURIDINE 5'-TRIPHOSPHATE
3ZN-1Ligand/IonZINC ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION
2UTP1Ligand/IonURIDINE 5'-TRIPHOSPHATE
3ZN-1Ligand/IonZINC ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:367 , CYS A:373 , CYS A:374 , CYS A:381BINDING SITE FOR RESIDUE ZN A 501
2AC2SOFTWAREASP A:202 , UTP A:503 , HOH A:649 , HOH A:743BINDING SITE FOR RESIDUE MG A 502
3AC3SOFTWAREGLY A:187 , SER A:188 , GLU A:191 , ASP A:202 , ARG A:353 , SER A:412 , TYR A:413 , LYS A:416 , MG A:502 , HOH A:604 , HOH A:628 , HOH A:652 , HOH A:695 , HOH A:743BINDING SITE FOR RESIDUE UTP A 503
4AC4SOFTWAREHIS B:367 , CYS B:373 , CYS B:374 , CYS B:381BINDING SITE FOR RESIDUE ZN B 501
5AC5SOFTWAREASP B:202 , UTP B:503 , HOH B:632BINDING SITE FOR RESIDUE MG B 502
6AC6SOFTWAREGLY B:187 , SER B:188 , ASP B:202 , ARG B:353 , SER B:412 , TYR B:413 , LYS B:416 , ASN B:459 , MG B:502 , HOH B:629 , HOH B:632 , HOH B:642 , HOH B:651 , HOH B:660 , HOH B:690 , HOH B:695BINDING SITE FOR RESIDUE UTP B 503

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4JLZ)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Lys A:289 -Pro A:290
2Lys B:289 -Pro B:290

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4JLZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4JLZ)

(-) Exons   (0, 0)

(no "Exon" information available for 4JLZ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:363
                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains d4jlza1 A:135-382 cGAMP synthase, cGAS N-terminal domain                                                                                                                                                                                                d4jlza2 A:383-497 cGAMP synthase, cGAS C-terminal domain                                                            SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhheee...............eeeeeeeee...eeeee.......eeeee........hhh.ee..eehhhhhhhhhhhhhhhhhhhhhhh.eee.........eeeee.....eeeeeeeeeee....hhhhh.........hhhhhhhhhh..eeeee.......hhhhh.eeeehhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh..................hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jlz A 135 GAWKLQTVLEKVRLSRHEISEAAEVVNWVVEHLLRRLQGGESEFKGVALLRTGSYYERVKISAPNEFDVMFKLEVPRIQLEEYCNSGAHYFVKFKRNPGGNPLEQFLEKEILSASKMLSKFRKIIKEEIKNIEDTGVTVERKRRGSPAVTLLISKPKEISVDIILALESKSSWPASTQKGLPISQWLGAKVKNNLKRQPFYLVPKHAKEGSGFQEETWRLSFSHIEKDILKNHGQSKTCCEIDGVKCCRKECLKLMKYLLEQLKKKFGNRRELAKFCSYHVKTAFFHVCTQDPHDNQWHLKNLECCFDNCVAYFLQCLKTEQLANYFIPGVNLFSRDLIDKPSKEFLSKQIEYERNNGFPVFW 497
                                   144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494   


Chain B from PDB  Type:PROTEIN  Length:355
                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains d4jlzb1 B:135-382 cGAMP synthase, cGAS N-terminal domain                                                                                                                                                                                        d4jlzb2 B:383-497 cGAMP synthase, cGAS C-terminal domain                                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......eee...............eeeeeeeee....eeee......eeeee..hhhhh....hhhhhhhhhhhhhhhhhhhhh...eee........eeeeeee...eeeeeeeeeeee....hhhhh.........hhhhhhhhhh..eeeee..ee....ee...eeeehhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhhhh.hhhhhh.hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh..................hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jlz B 135 GAWKLQTVLEKVRLSRHEISEAAEVVNWVVEHLLRRLQGGESEFKGVALLRTGSYYERVKISAPNEFDVMFKLEVPRIQLEEYCNSGAHYFVKFPLEQFLEEILSASKMLSKFRKIIKEEIKNIEDTGVTVERKRRGSPAVTLLISKPKEISVDIILALESKSSWPASTQKGLPISQWLGAKVKNNLKRQPFYLVPKHAKEGSGFQEETWRLSFSHIEKDILKNHGQSKTCCEIDGVKCCRKECLKLMKYLLEQLKKKFGNRRELAKFCSYHVKTAFFHVCTQDPHDNQWHLKNLECCFDNCVAYFLQCLKTEQLANYFIPGVNLFSRDLIDKPSKEFLSKQIEYERNNGFPVFW 497
                                   144       154       164       174       184       194       204       214       224   ||  241||     252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492     
                                                                                                                       228|   242|                                                                                                                                                                                                                                                             
                                                                                                                        236    244
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 4)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4JLZ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4JLZ)

(-) Gene Ontology  (17, 17)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CGAS_PIG | I3LM39: 4jlx 4kb6

(-) Related Entries Specified in the PDB File

4jlx