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Title :   CRYSTAL STRUCTURE OF A BACTERIAL FUCOSIDASE WITH IMINOSUGAR INHIBITOR 4-EPI-(+)-CODONOPSININE

Authors :   D. W. Wright, G. J. Davies

Date :   28 Feb 13 (Deposition) - 18 Sep 13 (Release) - 18 Sep 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Alpha-L-Fucosidase, Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Hottin, D. W. Wright, A. Steenackers, P. Delannoy, F. Dubar, C. Biot G. J. Davies, J. B. Behr
Alpha-L-Fucosidase Inhibition By Pyrrolidine-Ferrocene Hybrids: Rationalization Of Ligand-Binding Properties By Structural Studies.
Chemistry V. 19 9526 2013
PubMed-ID: 23740878 | Reference-DOI: 10.1002/CHEM.201301001

Molecule 1 - ALPHA-L-FUCOSIDASE
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET-YSBLIC
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Fragment	:	RESIDUES 35-484
	Organism Scientific	:	BACTEROIDES THETAIOTAOMICRON
	Organism Taxid	:	226186
	Strain	:	VPI-5482

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (5, 13)

No.	Name	Count	Type	Full Name
1	16Z	2	Ligand/Ion	(2S,3S,4R,5S)-2-(4-METHOXYPHENYL)-1,5-DIMETHYLPYRROLIDINE-3,4-DIOL
2	EPE	1	Ligand/Ion	4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
3	GOL	1	Ligand/Ion	GLYCEROL
4	IMD	5	Ligand/Ion	IMIDAZOLE
5	SO4	4	Ligand/Ion	SULFATE ION

Biological Unit 1 (4, 6)

No.	Name	Count	Type	Full Name
1	16Z	1	Ligand/Ion	(2S,3S,4R,5S)-2-(4-METHOXYPHENYL)-1,5-DIMETHYLPYRROLIDINE-3,4-DIOL
2	EPE	-1	Ligand/Ion	4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
3	GOL	1	Ligand/Ion	GLYCEROL
4	IMD	3	Ligand/Ion	IMIDAZOLE
5	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 2 (4, 7)

No.	Name	Count	Type	Full Name
1	16Z	1	Ligand/Ion	(2S,3S,4R,5S)-2-(4-METHOXYPHENYL)-1,5-DIMETHYLPYRROLIDINE-3,4-DIOL
2	EPE	1	Ligand/Ion	4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
3	GOL	-1	Ligand/Ion	GLYCEROL
4	IMD	2	Ligand/Ion	IMIDAZOLE
5	SO4	3	Ligand/Ion	SULFATE ION

Asymmetric Unit (13, 13)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	HIS A:66 , GLU A:87 , TRP A:88 , HIS A:135 , TYR A:178 , ASP A:229 , TRP A:232 , ARG A:262 , GLU A:288 , TRP A:316 , GOL A:506	BINDING SITE FOR RESIDUE 16Z A 501
02	AC2	SOFTWARE	ILE A:65 , TRP A:117 , MET A:120 , TYR A:168 , PHE A:359	BINDING SITE FOR RESIDUE IMD A 502
03	AC3	SOFTWARE	LYS A:90 , PRO A:96 , ALA A:97 , HOH A:864	BINDING SITE FOR RESIDUE IMD A 503
04	AC4	SOFTWARE	ARG A:399	BINDING SITE FOR RESIDUE IMD A 504
05	AC5	SOFTWARE	ARG A:262 , ARG A:271 , HIS A:272 , HOH A:988	BINDING SITE FOR RESIDUE SO4 A 505
06	AC6	SOFTWARE	ALA A:85 , GLU A:87 , TRP A:88 , TRP A:92 , ASN A:314 , 16Z A:501 , HOH A:713 , HOH A:1076	BINDING SITE FOR RESIDUE GOL A 506
07	AC7	SOFTWARE	HIS B:66 , GLU B:87 , TRP B:88 , HIS B:135 , TYR B:178 , ASP B:229 , TRP B:232 , ARG B:262 , GLU B:288 , TRP B:316	BINDING SITE FOR RESIDUE 16Z B 501
08	AC8	SOFTWARE	ILE B:65 , TRP B:117 , MET B:120 , TYR B:168 , PHE B:359	BINDING SITE FOR RESIDUE IMD B 502
09	AC9	SOFTWARE	TRP B:241	BINDING SITE FOR RESIDUE IMD B 503
10	BC1	SOFTWARE	ARG B:262 , ARG B:271 , HIS B:272 , HOH B:856	BINDING SITE FOR RESIDUE SO4 B 504
11	BC2	SOFTWARE	LYS B:90 , PRO B:96 , ALA B:97 , HOH B:904	BINDING SITE FOR RESIDUE SO4 B 505
12	BC3	SOFTWARE	GLY B:286 , GLU B:288 , ARG B:290 , HOH B:974	BINDING SITE FOR RESIDUE SO4 B 506
13	BC4	SOFTWARE	TYR B:82 , GLY B:83 , GLY B:84 , TRP B:92 , HOH B:972	BINDING SITE FOR RESIDUE EPE B 507

(no "SS Bond" information available for 4JFS)

(no "Cis Peptide Bond" information available for 4JFS)

(no "SAP(SNP)/Variant" information available for 4JFS)

(no "PROSITE Motif" information available for 4JFS)

(no "Exon" information available for 4JFS)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:438
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...............hhhhhhhhhhheeeee..hhhhh...ee..ee...hhhhhhhhh..hhhhhhhhhhhh.....hhhhhhhhhhhhh..eeeeeee...............hhhhh....hhhhhhhhhhhhh..eeeeeee..............hhhhhhhhhhhhhhhhhhhhhhhhhh....eeeee...hhhhhhhhhhhhhhhhhhhhhh...ee.hhhh................................hhhhhhh..eeee...........hhhhh...hhhhhhhhhhhhhhh..eeeeee........hhhhhhhhhhhhhhhhhhhhhh.............eeeee.....eeeee.......eeeee....eeeeeeee.....ee.eeeee..eeeee.........eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4jfs A  35 EIPLKYGATNEGKRQDPAMQKFRDNRLGAFIHWGLYAIPGGEWNGKVYGGAAEWLKSWAKVPADEWLKLMDQWNPTKFDAKKWAKMAKEMGTKYVKITTKHHEGFCLWPSKYTKYTVANTPYKRDILGELVKAYNDEGIDVHFYFSVMDWSNPDYRYDIKSKEDSIAFSRFLEFTDNQLKELATRYPTVKDFWFDGTWDASVKKNGWWTAHAEQMLKELVPGVAINSRLRADDKGKRHFDSNGRLMGDYESGYERRLPDPVKDLKVTQWDWEACMTIPENQWGYHKDWSLSYVKTPIEVIDRIVHAVSMGGNMVVNFGPQADGDFRPEEKAMATAIGKWMNRYGKAVYACDYAGFEKQDWGYYTRGKNDEVYMVVFNQPYSERLIVKTPKGITVEKATLLTTGEDITVVETTRNEYNVSVPKKNPGEPYVIQLKVRAA 472
                                    44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464

Chain B from PDB  Type:PROTEIN  Length:437
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............hhhhhhhhhhheeeee..hhhhh...ee..ee...hhhhhhhhh..hhhhhhhhhhhh.....hhhhhhhhhhhhh..eeeee.................hhhhh....hhhhhhhhhhhhh..eeeeeee..............hhhhhhhhhhhhhhhhhhhhhhhhhh....eeeee...hhhhhhhhhhhhhhhhhhhhhh...ee.hhhh................................hhhhhhh..eeee...........hhhhh...hhhhhhhhhhhhhhh..eeeeee........hhhhhhhhhhhhhhhhhhhhhh.............eeeee.....eeeee.......eeeee.....eeeeeee.....ee.eeeee..eeeee.........eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jfs B  35 EIPLKYGATNEGKRQDPAMQKFRDNRLGAFIHWGLYAIPGGEWNGKVYGGAAEWLKSWAKVPADEWLKLMDQWNPTKFDAKKWAKMAKEMGTKYVKITTKHHEGFCLWPSKYTKYTVANTPYKRDILGELVKAYNDEGIDVHFYFSVMDWSNPDYRYDIKSKEDSIAFSRFLEFTDNQLKELATRYPTVKDFWFDGTWDASVKKNGWWTAHAEQMLKELVPGVAINSRLRADDKGKRHFDSNGRLMGDYESGYERRLPDPVKDLKVTQWDWEACMTIPENQWGYHKDWSLSYVKTPIEVIDRIVHAVSMGGNMVVNFGPQADGDFRPEEKAMATAIGKWMNRYGKAVYACDYAGFEKQDWGYYTRGKNDEVYMVVFNQPYSERLIVKTPKGITVEKATLLTTGEDITVVETTRNEYNVSVPKKNPGEPYVIQLKVRA 471
                                    44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4JFS)

(no "CATH Domain" information available for 4JFS)

(no "Pfam Domain" information available for 4JFS)

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