4JES - JenaLib

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Title :   1.6A RESOLUTION APO STRUCTURE OF THE HEMOPHORE HASA FROM YERSINIA PESTIS (HEXAGONAL FORM)

Authors :   R. Kumar, S. Lovell, K. P. Battaile, M. Rivera

Date :   27 Feb 13 (Deposition) - 24 Apr 13 (Release) - 29 May 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.60

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Heme Binding Protein, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   R. Kumar, S. Lovell, H. Matsumura, K. P. Battaile, P. Moenne-Loccoz, M. Rivera
The Hemophore Hasa From Yersinia Pestis (Hasayp) Coordinate Hemin With A Single Residue, Tyr75, And With Minimal Conformational Change.
Biochemistry V. 52 2705 2013
PubMed-ID: 23578210 | Reference-DOI: 10.1021/BI400280Z

Molecule 1 - HEMOPHORE HASA
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET11A
	Expression System Strain	:	BL21-GOLD (DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	HASA, Y0314, YP_3127, YPO3922
	Organism Scientific	:	YERSINIA PESTIS
	Organism Taxid	:	632
	Synonym	:	SECRETED HEMOPHORE

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 7)

No.	Name	Count	Type	Full Name
1	MLI	2	Ligand/Ion	MALONATE ION
2	NA	1	Ligand/Ion	SODIUM ION
3	P6G	3	Ligand/Ion	HEXAETHYLENE GLYCOL
4	TAM	1	Ligand/Ion	TRIS(HYDROXYETHYL)AMINOMETHANE

Biological Unit 1 (2, 2)

No.	Name	Count	Type	Full Name
1	MLI	1	Ligand/Ion	MALONATE ION
2	NA	-1	Ligand/Ion	SODIUM ION
3	P6G	1	Ligand/Ion	HEXAETHYLENE GLYCOL
4	TAM	-1	Ligand/Ion	TRIS(HYDROXYETHYL)AMINOMETHANE

Biological Unit 2 (3, 4)

No.	Name	Count	Type	Full Name
1	MLI	1	Ligand/Ion	MALONATE ION
2	NA	-1	Ligand/Ion	SODIUM ION
3	P6G	2	Ligand/Ion	HEXAETHYLENE GLYCOL
4	TAM	1	Ligand/Ion	TRIS(HYDROXYETHYL)AMINOMETHANE

Asymmetric Unit (7, 7)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	SER A:76 , HIS A:84 , ALA A:97 , THR A:98 , PHE A:125 , HOH A:436 , HOH A:440	BINDING SITE FOR RESIDUE MLI A 201
2	AC2	SOFTWARE	ARG A:40 , GLY A:41 , PHE A:43 , LEU A:49 , PHE A:50 , TYR A:55 , HIS A:81 , PHE A:83 , HIS A:140 , ARG A:144 , MET A:147 , HOH A:427	BINDING SITE FOR RESIDUE P6G A 202
3	AC3	SOFTWARE	P6G B:203 , HOH B:403 , HOH B:417	BINDING SITE FOR RESIDUE NA B 201
4	AC4	SOFTWARE	SER A:173 , ILE A:174 , HOH A:312 , SER B:173 , ILE B:174 , HOH B:303 , HOH B:404 , HOH B:405	BINDING SITE FOR RESIDUE MLI B 202
5	AC5	SOFTWARE	THR B:53 , GLU B:70 , NA B:201 , HOH B:341 , HOH B:356 , HOH B:418	BINDING SITE FOR RESIDUE P6G B 203
6	AC6	SOFTWARE	PHE B:43 , TYR B:55 , TYR B:75 , SER B:76 , PHE B:83 , HIS B:140 , ARG B:144	BINDING SITE FOR RESIDUE P6G B 204
7	AC7	SOFTWARE	THR B:48 , LEU B:49 , PHE B:50 , HOH B:410	BINDING SITE FOR RESIDUE TAM B 205

(no "SS Bond" information available for 4JES)

Asymmetric Unit

No.	Residues
1	Met A:78	-	Pro A:79
2	Met B:78	-	Pro B:79

(no "SAP(SNP)/Variant" information available for 4JES)

(no "PROSITE Motif" information available for 4JES)

(no "Exon" information available for 4JES)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:177
                                                                                                                                                                                                                 
               SCOP domains d4jesa_ A: automated matches                                                                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee.hhhh..hhhhhhhhhhhhhhhhhhhhhhhh...eee......eeeeeeee......eeeeeeeeeee.......eeeeeeeeeeeeeeee......eeeeeeeeeee...eee......hhhhhh.hhhhhhhhhhhh..hhhhhhhhhhh......hhhhh..eee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jes A   2 STTIQYNSNYADYSISSYLREWANNFGDIDQAPAETKDRGSFSGSSTLFSGTQYAIGSSHSNPEGMIAEGDLKYSFMPQHTFHGQIDTLQFGKDLATNAGGAGKHLEKIDITFNELDLSGEFDSGKSMTENHQGDMHKSVRGLMKGNPDPMLEVMKAKGINVDTAFKDLSIASQYPD 180
                                    11        21        31        41        51        61        71        81        91       101||     113       123       133       143       153       163       173       
                                                                                                                              102|                                                                           
                                                                                                                               105

Chain B from PDB  Type:PROTEIN  Length:179
                                                                                                                                                                                                                   
               SCOP domains d4jesb_ B: automated matches                                                                                                                                                        SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee.hhhh..hhhhhhhhhhhhhhhhhhhhhhhh...eee......eeeeeeee......eeeeeeeeeee.......eeeeeeeeeeeeeeee...hhhh.eeeeeeeeeeeeeeeee......hhhhhh.hhhhhhhhhhhh..hhhhhhhhhhh......hhhhh..eee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jes B   2 STTIQYNSNYADYSISSYLREWANNFGDIDQAPAETKDRGSFSGSSTLFSGTQYAIGSSHSNPEGMIAEGDLKYSFMPQHTFHGQIDTLQFGKDLATNAGGPSAGKHLEKIDITFNELDLSGEFDSGKSMTENHQGDMHKSVRGLMKGNPDPMLEVMKAKGINVDTAFKDLSIASQYPD 180
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

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Folds(

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Superfamilies( (-)

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Families(

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Protein Domains( (-)

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Organisms( (-)

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Class: Alpha and beta proteins (a+b) (23004)

Fold: Heme-binding protein A (HasA) (12)

Superfamily: Heme-binding protein A (HasA) (12)

Family: automated matches (4)

Protein domain: automated matches (4)

Yersinia pestis [TaxId: 632] (3)

1a	d4jesa_	A:
1b	d4jesb_	B:

(no "CATH Domain" information available for 4JES)

(no "Pfam Domain" information available for 4JES)

Asymmetric Unit(hide GO term definitions)

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	Cis Peptide Bonds
		Met A:78 - Pro A:79	[ RasMol ]
		Met B:78 - Pro B:79	[ RasMol ]

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		Biological Unit 2	[ Jena3D ]

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Description

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Ligands, Modified Residues, Ions (4, 7)

Sites (7, 7)

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

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