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(-) Description

Title :  1.1A RESOLUTION APO STRUCTURE OF THE HEMOPHORE HASA FROM YERSINIA PESTIS (TETRAGONAL FORM)
 
Authors :  R. Kumar, S. Lovell, K. P. Battaile, M. Rivera
Date :  27 Feb 13  (Deposition) - 24 Apr 13  (Release) - 29 May 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.10
Chains :  Asym./Biol. Unit :  A
Keywords :  Heme Binding Protein, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Kumar, S. Lovell, H. Matsumura, K. P. Battaile, P. Moenne-Loccoz, M. Rivera
The Hemophore Hasa From Yersinia Pestis (Hasayp) Coordinate Hemin With A Single Residue, Tyr75, And With Minimal Conformational Change.
Biochemistry V. 52 2705 2013
PubMed-ID: 23578210  |  Reference-DOI: 10.1021/BI400280Z

(-) Compounds

Molecule 1 - HEMOPHORE HASA
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET11A
    Expression System Strain: BL21-GOLD (DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 1-193
    Gene: HASA, Y0314, YP_3127, YPO3922
    Organism Scientific: YERSINIA PESTIS
    Organism Taxid: 632
    Synonym: SECRETED HEMOPHORE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1NA1Ligand/IonSODIUM ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:169 , LYS A:170 , LEU A:172 , ALA A:175 , HOH A:361 , HOH A:513BINDING SITE FOR RESIDUE NA A 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4JER)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Met A:78 -Pro A:79

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4JER)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4JER)

(-) Exons   (0, 0)

(no "Exon" information available for 4JER)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:181
                                                                                                                                                                                                                     
               SCOP domains d4jera_ A: automated matches                                                                                                                                                          SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee.hhhh..hhhhhhhhhhhhhhhhhhhhhhhh...eee....eeeeeeee......eeeeeeeeeee.......eeeeeeeeeeeeeeee...hhhh.eeeeeeeeeee...eee......hhhhhh.hhhhhhhhhhhh..hhhhhhhhhhh......hhhhh..eee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jer A   2 STTIQYNSNYADYSISSYLREWANNFGDIDQAPAETKDRGSFSGSSFSGTQYAIGSSHSNPEGMIAEGDLKYSFMPQHTFHGQIDTLQFGKDLATNAGGPSAGKHLEKIDITFNELDLSGEFDSGKSMTENHQGDMHKSVRGLMKGNPDPMLEVMKAKGINVDTAFKDLSIASQYPDSGYM 184
                                    11        21        31        41     || 53        63        73        83        93       103       113       123       133       143       153       163       173       183 
                                                                        47|                                                                                                                                      
                                                                         50
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4JER)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4JER)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q7CL15_YERPE | Q7CL15: 4jes 4jet

(-) Related Entries Specified in the PDB File

4jes 4jet