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(-) Description

Title :  CRYSTAL STRUCTURE OF ALPHA-COP/E19 COMPLEX
 
Authors :  W. Ma, J. Goldberg
Date :  14 Feb 13  (Deposition) - 27 Mar 13  (Release) - 17 Apr 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A (1x),C (1x)
Biol. Unit 2:  B,D  (1x)
Keywords :  Beta Propeller Domain, Dilysine Motif, Er Retrieval, Vesicle Trafficking, Protein Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  W. Ma, J. Goldberg
Rules For The Recognition Of Dilysine Retrieval Motifs By Coatomer.
Embo J. V. 32 926 2013
PubMed-ID: 23481256  |  Reference-DOI: 10.1038/EMBOJ.2013.41

(-) Compounds

Molecule 1 - COATOMER SUBUNIT ALPHA
    Chains: A, B
    Organism Common: FISSION YEAST
    Organism Scientific: SCHIZOSACCHAROMYCES POMBE
    Organism Taxid: 4896
 
Molecule 2 - MEMBRANE GLYCOPROTEIN E3 GP19K
    Chains: C, D
    Engineered: YES
    Organism Scientific: UNIDENTIFIED
    Organism Taxid: 32644
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A (1x) C (1x) 
Biological Unit 2 (1x):  B D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4J8G)

(-) Sites  (0, 0)

(no "Site" information available for 4J8G)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4J8G)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Ala A:200 -Asp A:201
2Asp B:201 -Ala B:202

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4J8G)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4J8G)

(-) Exons   (0, 0)

(no "Exon" information available for 4J8G)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:298
                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee...eeeeee.....eeeeee...eeeeee....eeeeeee.....eeeeee.....eeeeee....eeeee....eeeeee......eeeeee.....eeeeee....eeeee....eeeeee......eeeeee.....eeeeee...eeeeee........eeeeeee.....eeeeee.....eeeeee...eeeeeee....eeeeeeee.....eeeeee.....eeeeee...eeeeee.....eeeeee.....eeeeee......eeeee..eeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4j8g A   1 MAMLTKFESRSSRAKGVAFHPTQPWILTSLHNGRIQLWDYRMGTLLDRFDGHDGPVRGIAFHPTQPIFVSGGDDYKVNVWNYKSRKLLFSLCGHMDYVRVCTFHHEYPWILSCSDDQTIRIWNWQSRNCIAILTGHSHYVMCAAFHPSEDLIVSASLDQTVRVWDISGLRADAIVKFVLEGHDRGVNWCAFHPTLPLILSAGDDRLVKLWRMTASKAWEVDTCRGHFNNVSCCLFHPHQELILSASEDKTIRVWDLNRRTAVQTFRRANDRFWFITVHPKLNLFAAAHDSGVMVFKLE 327
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170|      209       219       229       239       249       259       269       279       289       299       309       319        
                                                                                                                                                                                                   170|                                                                                                                               
                                                                                                                                                                                                    200                                                                                                                               


Chain B from PDB  Type:PROTEIN  Length:302
                                                                                                                                                                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee...eeeeee.....eeeeee...eeeeee....eeeeeee.....eeeeee.....eeeeee....eeeee....eeeeee......eeeeee.....eeeeee....eeeee....eeeeee......eeeeee.....eeeeee....eeeeehhhhhh......eeeeee......eeeeee.....eeeeee...eeeeeee....eeeeeeee.....eeeeee.....eeeeee...eeeeee.....eeeeee.....eeeeee......eeeee..eeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4j8g B   1 MAMLTKFESRSSRAKGVAFHPTQPWILTSLHNGRIQLWDYRMGTLLDRFDGHDGPVRGIAFHPTQPIFVSGGDDYKVNVWNYKSRKLLFSLCGHMDYVRVCTFHHEYPWILSCSDDQTIRIWNWQSRNCIAILTGHSHYVMCAAFHPSEDLIVSASLDQTVRVWDISGLRMKNAADAIVKFVLEGHDRGVNWCAFHPTLPLILSAGDDRLVKLWRMTASKAWEVDTCRGHFNNVSCCLFHPHQELILSASEDKTIRVWDLNRRTAVQTFRRANDRFWFITVHPKLNLFAAAHDSGVMVFKLE 327
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170    || 205       215       225       235       245       255       265       275       285       295       305       315       325  
                                                                                                                                                                                                        175|                                                                                                                              
                                                                                                                                                                                                         201                                                                                                                              


Chain C from PDB  Type:PROTEIN  Length:11
                                           
               SCOP domains ----------- SCOP domains
               CATH domains ----------- CATH domains
               Pfam domains ----------- Pfam domains
         Sec.struct. author .hhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------- SAPs(SNPs)
                    PROSITE ----------- PROSITE
                 Transcript ----------- Transcript
                 4j8g C   0 AASFIDAKKMP  10
                                     9 


Chain D from PDB  Type:PROTEIN  Length:9
                                         
               SCOP domains --------- SCOP domains
               CATH domains --------- CATH domains
               Pfam domains --------- Pfam domains
         Sec.struct. author .hhhhh... Sec.struct. author
                 SAPs(SNPs) --------- SAPs(SNPs)
                    PROSITE --------- PROSITE
                 Transcript --------- Transcript
                 4j8g D   2 SFIDAKKMP  10
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4J8G)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4J8G)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4J8G)

(-) Gene Ontology  (16, 16)

Asymmetric Unit(hide GO term definitions)

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  Sites
(no "Sites" information available for 4j8g)
 
  Cis Peptide Bonds
    Ala A:200 - Asp A:201   [ RasMol ]  
    Asp B:201 - Ala B:202   [ RasMol ]  
 
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  COPA_SCHPO | Q96WV5
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        COPA_SCHPO | Q96WV5: 4j87 4j8b

(-) Related Entries Specified in the PDB File

4j73 4j77 4j78 4j79 4j81 4j82 4j84 4j86 4j87 4j8b