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(-) Description

Title :  CRYSTAL STRUCTURE OF ALPHA-COP/EMP47P COMPLEX
 
Authors :  W. Ma, J. Goldberg
Date :  14 Feb 13  (Deposition) - 27 Mar 13  (Release) - 17 Apr 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.88
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Beta Propeller Domain, Dilysine Motif, Er Retrieval, Protein Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  W. Ma, J. Goldberg
Rules For The Recognition Of Dilysine Retrieval Motifs By Coatomer.
Embo J. V. 32 926 2013
PubMed-ID: 23481256  |  Reference-DOI: 10.1038/EMBOJ.2013.41

(-) Compounds

Molecule 1 - COATOMER ALPHA SUBUNIT
    Chains: A
    Organism Common: FISSION YEAST
    Organism Scientific: SCHIZOSACCHAROMYCES POMBE
    Organism Taxid: 4896
 
Molecule 2 - EMP47P
    Chains: B
    Engineered: YES
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4J8B)

(-) Sites  (0, 0)

(no "Site" information available for 4J8B)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4J8B)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4J8B)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4J8B)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4J8B)

(-) Exons   (0, 0)

(no "Exon" information available for 4J8B)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:298
                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.....eeeeee.....eeeeee...eeeeee....eeeeeee.....eeeeee.....eeeeee....eeeee....eeeeee......eeeeee.....eeeeee....eeeee....eeeeee......eeeeee.....eeeeee...eeeeee.hhhh...eeeeeee.....eeeeee.....eeeeee....eeeeee....eeeeeee......eeeeee.....eeeeee...eeeeee.....eeeeee.....eeeeee......eeeee..eeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4j8b A   1 MAMLTKFESRSSRAKGVAFHPTQPWILTSLHNGRIQLWDYRMGTLLDRFDGHDGPVRGIAFHPTQPIFVSGGDDYKVNVWNYKSRKLLFSLCGHMDYVRVCTFHHEYPWILSCSDDQTIRIWNWQSRNCIAILTGHSHYVMCAAFHPSEDLIVSASLDQTVRVWDISGLRADAIVKFVLEGHDRGVNWCAFHPTLPLILSAGDDRLVKLWRMTASKAWEVDTCRGHFNNVSCCLFHPHQELILSASEDKTIRVWDLNRRTAVQTFRRANDRFWFITVHPKLNLFAAAHDSGVMVFKLE 327
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170|      209       219       229       239       249       259       269       279       289       299       309       319        
                                                                                                                                                                                                   170|                                                                                                                               
                                                                                                                                                                                                    200                                                                                                                               


Chain B from PDB  Type:PROTEIN  Length:6
                                      
               SCOP domains ------ SCOP domains
               CATH domains ------ CATH domains
               Pfam domains ------ Pfam domains
         Sec.struct. author ...... Sec.struct. author
                 SAPs(SNPs) ------ SAPs(SNPs)
                    PROSITE ------ PROSITE
                 Transcript ------ Transcript
                 4j8b B   1 LKTKLL   6
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4J8B)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4J8B)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4J8B)

(-) Gene Ontology  (16, 16)

Asymmetric/Biological Unit(hide GO term definitions)

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  COPA_SCHPO | Q96WV5
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        COPA_SCHPO | Q96WV5: 4j87 4j8g

(-) Related Entries Specified in the PDB File

4j73 4j77 4j78 4j79 4j81 4j82 4j84 4j86 4j87 4j8g