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(-) Description

Title :  CRYSTAL STRUCTURE OF RIBOSOMAL-PROTEIN-ALANINE N-ACETYLTRANSFERASE FROM BRUCELLA MELITENSIS
 
Authors :  Seattle Structural Genomics Center For Infectious Disease (S
Date :  05 Feb 13  (Deposition) - 13 Mar 13  (Release) - 13 Mar 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.75
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Ssgcid, Seattle Structural Genomics Center For Infectious Disease, Ribosomal-Protein-Alanine N-Acetyltransferase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Seattle Structural Genomics Center For Infectious Disease (Ssgcid), J. Abendroth, Sankaran. B. , J. W. Fairman, D. Lorimer, T. E. Edwards
Crystal Structure Of Ribosomal-Protein-Alanine N-Acetyltransferase From Brucella Melitensis
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - GCN5-RELATED N-ACETYLTRANSFERASE
    Chains: A, B, C, D
    EC Number: 2.3.1.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: BRABA.17352.A.A1
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: BAB1_1664
    Organism Scientific: BRUCELLA MELITENSIS BIOVAR ABORTUS
    Organism Taxid: 359391
    Strain: 2308

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 13)

Asymmetric Unit (4, 13)
No.NameCountTypeFull Name
1EDO4Ligand/Ion1,2-ETHANEDIOL
2IMD1Ligand/IonIMIDAZOLE
3NA2Ligand/IonSODIUM ION
4SO46Ligand/IonSULFATE ION
Biological Unit 1 (2, 5)
No.NameCountTypeFull Name
1EDO2Ligand/Ion1,2-ETHANEDIOL
2IMD-1Ligand/IonIMIDAZOLE
3NA-1Ligand/IonSODIUM ION
4SO43Ligand/IonSULFATE ION
Biological Unit 2 (3, 6)
No.NameCountTypeFull Name
1EDO2Ligand/Ion1,2-ETHANEDIOL
2IMD1Ligand/IonIMIDAZOLE
3NA-1Ligand/IonSODIUM ION
4SO43Ligand/IonSULFATE ION

(-) Sites  (13, 13)

Asymmetric Unit (13, 13)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:94 , GLY A:95 , ILE A:98 , GLY A:99 , HOH A:326 , HOH A:329 , HOH A:331 , HOH A:392 , HOH A:422BINDING SITE FOR RESIDUE SO4 A 201
02AC2SOFTWARETRP A:44 , ARG A:48 , HOH A:350 , HOH A:374 , HOH A:423BINDING SITE FOR RESIDUE SO4 A 202
03AC3SOFTWAREALA A:29 , TRP A:31 , GLY A:121 , HOH A:309 , HOH A:330 , HOH A:379BINDING SITE FOR RESIDUE EDO A 203
04AC4SOFTWAREGLY B:95 , GLY B:96 , GLY B:97 , ILE B:98 , GLY B:99 , ARG B:100 , HOH B:351 , HOH B:380 , ARG C:153BINDING SITE FOR RESIDUE SO4 B 201
05AC5SOFTWAREHIS B:7 , GLU B:109 , HOH B:373 , HOH B:397 , HOH B:427BINDING SITE FOR RESIDUE NA B 202
06AC6SOFTWAREALA B:29 , GLY B:121 , HOH B:310 , HOH B:419BINDING SITE FOR RESIDUE EDO B 203
07AC7SOFTWAREARG B:153 , VAL C:89 , GLY C:95 , GLY C:96 , GLY C:97 , ILE C:98 , GLY C:99 , ARG C:100 , HOH C:313 , HOH C:333 , HOH C:418BINDING SITE FOR RESIDUE SO4 C 201
08AC8SOFTWAREHIS C:7 , GLU C:109 , IMD C:203 , HOH C:400 , HOH C:404 , HOH C:405BINDING SITE FOR RESIDUE NA C 202
09AC9SOFTWAREILE C:5 , GLU C:105 , GLU C:109 , NA C:202BINDING SITE FOR RESIDUE IMD C 203
10BC1SOFTWAREALA C:29 , GLY C:121 , HOH C:308 , HOH C:371 , HOH C:385BINDING SITE FOR RESIDUE EDO C 204
11BC2SOFTWAREGLY D:95 , GLY D:96 , GLY D:97 , ILE D:98 , GLY D:99 , ARG D:100 , HOH D:306 , HOH D:425BINDING SITE FOR RESIDUE SO4 D 201
12BC3SOFTWARETRP D:44 , ARG D:48 , HOH D:312 , HOH D:350 , HOH D:423 , HOH D:439BINDING SITE FOR RESIDUE SO4 D 202
13BC4SOFTWAREALA D:29 , ILE D:30 , TRP D:31 , GLY D:121BINDING SITE FOR RESIDUE EDO D 203

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4J3G)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4J3G)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4J3G)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4J3G)

(-) Exons   (0, 0)

(no "Exon" information available for 4J3G)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:164
                                                                                                                                                                                                    
               SCOP domains d4j3ga_ A: automated matches                                                                                                                                         SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee.hhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhh..eeeeee..eeeeeeeeee...hhhhh.eeeeeeee.hhhh..hhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhh..eeeeeeeeeeee..eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4j3g A   1 MTLLIRHATEADLPALLAIYNDAVENTLAIWNETLVDLENRHQWLENRNRDGFPVLVAEREGQVVGYASYGPFRPFEGFRHSSELSVYVASNARGGGIGRTLLAELIEEARERKVHVLIAGIEAGNAASIALHRSQGFEECGTLKQVGQKFGRWLDLLFMQKIL 164
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160    


Chain B from PDB  Type:PROTEIN  Length:164
                                                                                                                                                                                                    
               SCOP domains d4j3gb_ B: automated matches                                                                                                                                         SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee.hhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhh..eeeeee..eeeeeeeeee...hhhhh.eeeeeeee.hhhh..hhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhh..eeeeeeeeeeee..eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4j3g B   1 MTLLIRHATEADLPALLAIYNDAVENTLAIWNETLVDLENRHQWLENRNRDGFPVLVAEREGQVVGYASYGPFRPFEGFRHSSELSVYVASNARGGGIGRTLLAELIEEARERKVHVLIAGIEAGNAASIALHRSQGFEECGTLKQVGQKFGRWLDLLFMQKIL 164
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160    


Chain C from PDB  Type:PROTEIN  Length:162
                                                                                                                                                                                                  
               SCOP domains d4j3gc_ C: automated matches                                                                                                                                       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeee.hhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhh..eeeeee..eeeeeeeeee...hhhhh.eeeeeeee.hhhh..hhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhh..eeeeeeeeeeee..eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4j3g C   3 LLIRHATEADLPALLAIYNDAVENTLAIWNETLVDLENRHQWLENRNRDGFPVLVAEREGQVVGYASYGPFRPFEGFRHSSELSVYVASNARGGGIGRTLLAELIEEARERKVHVLIAGIEAGNAASIALHRSQGFEECGTLKQVGQKFGRWLDLLFMQKIL 164
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162  


Chain D from PDB  Type:PROTEIN  Length:163
                                                                                                                                                                                                   
               SCOP domains d4j3gd_ D: automated matches                                                                                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee.hhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhh..eeeeee..eeeeeeeeee...hhhhh.eeeeeeee.......hhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhh..eeeeeeeeeeee..eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4j3g D   2 TLLIRHATEADLPALLAIYNDAVENTLAIWNETLVDLENRHQWLENRNRDGFPVLVAEREGQVVGYASYGPFRPFEGFRHSSELSVYVASNARGGGIGRTLLAELIEEARERKVHVLIAGIEAGNAASIALHRSQGFEECGTLKQVGQKFGRWLDLLFMQKIL 164
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4J3G)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4J3G)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)

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