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(-) Description

Title :  ESTROGEN RECEPTOR IN COMPLEX WITH PROLINE-FLANKED LXXLL PEPTIDES
 
Authors :  S. Fuchs, H. D. Nguyen, T. Phan, M. Burton, L. Nieto, I. De Vries-Van Le A. Schmidt, M. Goodarzifard, S. Agten, R. Rose, C. Ottmann, L. G. Milro L. Brunsveld
Date :  04 Feb 13  (Deposition) - 13 Mar 13  (Release) - 10 Jul 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B,I,J
Biol. Unit 1:  A,I  (1x)
Biol. Unit 2:  B,J  (1x)
Keywords :  Estrogen Receptor, Proline, Lxxll, Alpha-Helix, Structure Stabilization, Hormone Receptor-Peptide Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Fuchs, H. D. Nguyen, T. T. Phan, M. F. Burton, L. Nieto, I. J. De Vries-Van Leeuwen, A. Schmidt, M. Goodarzifard, S. M. Agten R. Rose, C. Ottmann, L. G. Milroy, L. Brunsveld
Proline Primed Helix Length As A Modulator Of The Nuclear Receptor-Coactivator Interaction
J. Am. Chem. Soc. V. 135 4364 2013
PubMed-ID: 23437920  |  Reference-DOI: 10.1021/JA311748R

(-) Compounds

Molecule 1 - ESTROGEN RECEPTOR BETA
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET16B
    Expression System Strain: BL21
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: LIGAND BINDING DOMAIN, UNP RESIDUES 261-500
    Gene: ESR2
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: ER-BETA, NUCLEAR RECEPTOR SUBFAMILY 3 GROUP A MEMBER 2
 
Molecule 2 - 12-MER PEPTIDE
    Chains: I, J
    Engineered: YES
    Other Details: SYNTHETIC PEPTIDE
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABIJ
Biological Unit 1 (1x): A I 
Biological Unit 2 (1x):  B J

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1EST2Ligand/IonESTRADIOL
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1EST1Ligand/IonESTRADIOL
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1EST1Ligand/IonESTRADIOL

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREMET A:295 , LEU A:298 , GLU A:305 , MET A:336 , LEU A:339 , MET A:340 , ARG A:346 , PHE A:356 , GLY A:472 , HIS A:475 , LEU A:476 , HOH A:724BINDING SITE FOR RESIDUE EST A 600
2AC2SOFTWAREMET B:295 , LEU B:298 , GLU B:305 , MET B:336 , LEU B:339 , MET B:340 , ARG B:346 , PHE B:356 , GLY B:472 , HIS B:475 , LEU B:476 , HOH B:714BINDING SITE FOR RESIDUE EST B 600

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4J26)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4J26)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4J26)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4J26)

(-) Exons   (0, 0)

(no "Exon" information available for 4J26)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:228
                                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhh....eee.....eee.hhhhhh.hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4j26 A 261 DALSPEQLVLTLLEAEPPHVLISRPSAPFTEASMMMSLTKLADKELVHMISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSIDHPGKLIFAPDLVLDRDEGKCVEGILEIFDMLLATTSRFRELKLQHKEYLCVKAMILLNSSADSSRKLAHLLNAVTDALVWVIAKSGISSQQQSMRLANLLMLLSHVRHASNKGMEHLLNMKCKNVVPVYDLLLEMLNAH 498
                                   270       280       290       300       310       320       330       340       350       360       370       380       390       400       420       430       440       450       460       470       480       490        
                                                                                                                                                                              409|                                                                              
                                                                                                                                                                               420                                                                              


Chain B from PDB  Type:PROTEIN  Length:229
                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhh....eee.....eee.hhhhhh.hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4j26 B 261 DALSPEQLVLTLLEAEPPHVLISRPSAPFTEASMMMSLTKLADKELVHMISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSIDHPGKLIFAPDLVLDRDEGKCVEGILEIFDMLLATTSRFRELKLQHKEYLCVKAMILLNSSMADSSRKLAHLLNAVTDALVWVIAKSGISSQQQSMRLANLLMLLSHVRHASNKGMEHLLNMKCKNVVPVYDLLLEMLNAH 498
                                   270       280       290       300       310       320       330       340       350       360       370       380       390       400       410|      429       439       449       459       469       479       489         
                                                                                                                                                                               410|                                                                              
                                                                                                                                                                                420                                                                              


Chain I from PDB  Type:PROTEIN  Length:12
                                            
               SCOP domains ------------ SCOP domains
               CATH domains ------------ CATH domains
               Pfam domains ------------ Pfam domains
         Sec.struct. author .hhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------ SAPs(SNPs)
                    PROSITE ------------ PROSITE
                 Transcript ------------ Transcript
                 4j26 I   5 HPLLMRLLHHPS  16
                                    14  


Chain J from PDB  Type:PROTEIN  Length:10
                                          
               SCOP domains ---------- SCOP domains
               CATH domains ---------- CATH domains
               Pfam domains ---------- Pfam domains
         Sec.struct. author .hhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------- SAPs(SNPs)
                    PROSITE ---------- PROSITE
                 Transcript ---------- Transcript
                 4j26 J   5 HPLLMRLLHH  14
                                    14
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4J26)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4J26)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4J26)

(-) Gene Ontology  (91, 91)

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  4j26
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  ESR2_HUMAN | Q92731
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ESR2_HUMAN | Q92731: 1l2j 1nde 1qkm 1u3q 1u3r 1u3s 1u9e 1x76 1x78 1x7b 1x7j 1yy4 1yye 1zaf 2fsz 2giu 2i0g 2jj3 2nv7 2qtu 2yjd 2yly 2z4b 3oll 3ols 3omo 3omp 3omq 4j24 4zi1 5toa

(-) Related Entries Specified in the PDB File

3oll 4j24