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(-) Description

Title :  ESTROGEN RECEPTOR IN COMPLEX WITH PROLINE-FLANKED LXXLL PEPTIDES
 
Authors :  S. Fuchs, H. D. Nguyen, T. Phan, M. Burton, L. Nieto, I. De Vries-Van Le A. Schmidt, M. Goodarzifard, S. Agten, R. Rose, C. Ottmann, L. G. Milro L. Brunsveld
Date :  04 Feb 13  (Deposition) - 13 Mar 13  (Release) - 10 Jul 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B,C,D,I,J,K,L
Biol. Unit 1:  A,I  (1x)
Biol. Unit 2:  B,J  (1x)
Biol. Unit 3:  C,K  (1x)
Biol. Unit 4:  D,L  (1x)
Keywords :  Estrogen Receptor, Proline, Lxxll, Alpha-Helix, Structure Stabilization, Hormone Receptor-Peptide Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Fuchs, H. D. Nguyen, T. T. Phan, M. F. Burton, L. Nieto, I. J. De Vries-Van Leeuwen, A. Schmidt, M. Goodarzifard, S. M. Agten R. Rose, C. Ottmann, L. G. Milroy, L. Brunsveld
Proline Primed Helix Length As A Modulator Of The Nuclear Receptor-Coactivator Interaction
J. Am. Chem. Soc. V. 135 4364 2013
PubMed-ID: 23437920  |  Reference-DOI: 10.1021/JA311748R

(-) Compounds

Molecule 1 - ESTROGEN RECEPTOR BETA
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET16B
    Expression System Strain: BL21
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: LIGAND BINDING DOMAIN, UNP RESIDUE 261-500'
    Gene: ESR2
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: ER-BETA, NUCLEAR RECEPTOR SUBFAMILY 3 GROUP A MEMBER 2
 
Molecule 2 - 19-MER PEPTIDE
    Chains: K, I, J, L
    Engineered: YES
    Other Details: PHAGE DISPLAY DERIVED SEQUENCE.
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDIJKL
Biological Unit 1 (1x): A   I   
Biological Unit 2 (1x):  B   J  
Biological Unit 3 (1x):   C   K 
Biological Unit 4 (1x):    D   L

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric Unit (1, 4)
No.NameCountTypeFull Name
1EST4Ligand/IonESTRADIOL
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1EST1Ligand/IonESTRADIOL
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1EST1Ligand/IonESTRADIOL
Biological Unit 3 (1, 1)
No.NameCountTypeFull Name
1EST1Ligand/IonESTRADIOL
Biological Unit 4 (1, 1)
No.NameCountTypeFull Name
1EST1Ligand/IonESTRADIOL

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREMET A:295 , LEU A:298 , GLU A:305 , MET A:336 , LEU A:339 , ARG A:346 , PHE A:356 , HIS A:475 , LEU A:476 , HOH A:739BINDING SITE FOR RESIDUE EST A 600
2AC2SOFTWAREMET B:295 , GLU B:305 , MET B:336 , LEU B:339 , MET B:340 , ARG B:346 , HIS B:475 , LEU B:476BINDING SITE FOR RESIDUE EST B 600
3AC3SOFTWAREMET C:295 , LEU C:298 , GLU C:305 , MET C:336 , LEU C:339 , ARG C:346 , PHE C:356 , HIS C:475 , LEU C:476 , HOH C:761BINDING SITE FOR RESIDUE EST C 600
4AC4SOFTWAREMET D:295 , LEU D:298 , GLU D:305 , MET D:336 , LEU D:339 , ARG D:346 , PHE D:356 , HIS D:475 , LEU D:476BINDING SITE FOR RESIDUE EST D 600

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4J24)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Ser B:409 -Met B:410

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4J24)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4J24)

(-) Exons   (0, 0)

(no "Exon" information available for 4J24)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:225
                                                                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeee..eeee.hhhhhh.hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4j24 A 262 ALSPEQLVLTLLEAEPPHVLISRPSAPFTEASMMMSLTKLADKELVHMISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSIDHPGKLIFAPDLVLDRDEGKCVEGILEIFDMLLATTSRFRELKLQHKEYLCVKAMILLNSSSSRKLAHLLNAVTDALVWVIAKSGISSQQQSMRLANLLMLLSHVRHASNKGMEHLLNMKCKNVVPVYDLLLEMLNAH 498
                                   271       281       291       301       311       321       331       341       351       361       371       381       391       401       423       433       443       453       463       473       483       493     
                                                                                                                                                                             409|                                                                            
                                                                                                                                                                              422                                                                            


Chain B from PDB  Type:PROTEIN  Length:228
                                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeee..eeee.hhhhhh.hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4j24 B 261 DALSPEQLVLTLLEAEPPHVLISRPSAPFTEASMMMSLTKLADKELVHMISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSIDHPGKLIFAPDLVLDRDEGKCVEGILEIFDMLLATTSRFRELKLQHKEYLCVKAMILLNSSMDSSRKLAHLLNAVTDALVWVIAKSGISSQQQSMRLANLLMLLSHVRHASNKGMEHLLNMKCKNVVPVYDLLLEMLNAH 498
                                   270       280       290       300       310       320       330       340       350       360       370       380       390       400       410|      430       440       450       460       470       480       490        
                                                                                                                                                                               410|                                                                             
                                                                                                                                                                                421                                                                             


Chain C from PDB  Type:PROTEIN  Length:225
                                                                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeee..eeee.hhhhhh.hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4j24 C 262 ALSPEQLVLTLLEAEPPHVLISRPSAPFTEASMMMSLTKLADKELVHMISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSIDHPGKLIFAPDLVLDRDEGKCVEGILEIFDMLLATTSRFRELKLQHKEYLCVKAMILLNSSSSRKLAHLLNAVTDALVWVIAKSGISSQQQSMRLANLLMLLSHVRHASNKGMEHLLNMKCKNVVPVYDLLLEMLNAH 498
                                   271       281       291       301       311       321       331       341       351       361       371       381       391       401       423       433       443       453       463       473       483       493     
                                                                                                                                                                             409|                                                                            
                                                                                                                                                                              422                                                                            


Chain D from PDB  Type:PROTEIN  Length:221
                                                                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhh....eeeee..eeee.hhhhhh.hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4j24 D 264 SPEQLVLTLLEAEPPHVLISRPSAPFTEASMMMSLTKLADKELVHMISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSIDHPGKLIFAPDLVLDRDEGKCVEGILEIFDMLLATTSRFRELKLQHKEYLCVKAMILLNSSSRKLAHLLNAVTDALVWVIAKSGISSQQQSMRLANLLMLLSHVRHASNKGMEHLLNMKCKNVVPVYDLLLEMLNA 497
                                   273       283       293       303       313       323       333       343       353       363       373       383       393       403     ||426       436       446       456       466       476       486       496 
                                                                                                                                                                           409|                                                                          
                                                                                                                                                                            423                                                                          


Chain I from PDB  Type:PROTEIN  Length:12
                                            
               SCOP domains ------------ SCOP domains
               CATH domains ------------ CATH domains
               Pfam domains ------------ Pfam domains
         Sec.struct. author .hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------ SAPs(SNPs)
                    PROSITE ------------ PROSITE
                 Transcript ------------ Transcript
                 4j24 I   4 RHPLLLRHLLQN  15
                                    13  


Chain J from PDB  Type:PROTEIN  Length:11
                                           
               SCOP domains ----------- SCOP domains
               CATH domains ----------- CATH domains
               Pfam domains ----------- Pfam domains
         Sec.struct. author .hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------- SAPs(SNPs)
                    PROSITE ----------- PROSITE
                 Transcript ----------- Transcript
                 4j24 J   4 RHPLLLRHLLQ  14
                                    13 


Chain K from PDB  Type:PROTEIN  Length:12
                                            
               SCOP domains ------------ SCOP domains
               CATH domains ------------ CATH domains
               Pfam domains ------------ Pfam domains
         Sec.struct. author .hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------ SAPs(SNPs)
                    PROSITE ------------ PROSITE
                 Transcript ------------ Transcript
                 4j24 K   4 RHPLLLRHLLQN  15
                                    13  


Chain L from PDB  Type:PROTEIN  Length:10
                                          
               SCOP domains ---------- SCOP domains
               CATH domains ---------- CATH domains
               Pfam domains ---------- Pfam domains
         Sec.struct. author .hhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------- SAPs(SNPs)
                    PROSITE ---------- PROSITE
                 Transcript ---------- Transcript
                 4j24 L   4 RHPLLLRHLL  13
                                    13
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4J24)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4J24)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4J24)

(-) Gene Ontology  (91, 91)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ESR2_HUMAN | Q92731: 1l2j 1nde 1qkm 1u3q 1u3r 1u3s 1u9e 1x76 1x78 1x7b 1x7j 1yy4 1yye 1zaf 2fsz 2giu 2i0g 2jj3 2nv7 2qtu 2yjd 2yly 2z4b 3oll 3ols 3omo 3omp 3omq 4j26 4zi1 5toa

(-) Related Entries Specified in the PDB File

3oll 4j26