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(-) Description

Title :  LOW RESOLUTION CRYSTAL STRUCTURE OF THE FGFR2D2D3/FGF1/SR128545 COMPLEX
 
Authors :  D. Kudlinzki, K. Saxena, S. Sreeramulu, U. Schieborr, M. Dreyer, H. Sch H. Schwalbe
Date :  04 Feb 13  (Deposition) - 19 Feb 14  (Release) - 26 Feb 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.88
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Protein-Protein Complex, Immunoglobulin C-2 Type, Receptor Domain, Fgf Binding, Transferase, Protein Binding, Membrane Protein, Signaling Protein, Signaling Protein-Transferase Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Herbert, U. Schieborr, K. Saxena, J. Juraszek, F. De Smet, C. Alcouffe, M. Bianciotto, G. Saladino, D. Sibrac, D. Kudlinzki, S. Sreeramulu, A. Brown, P. Rigon, J. P. Herault, G. Lassalle, T. L. Blundell, F. Rousseau, A. Gils, J. Schymkowitz, P. Tompa, J. M. Herbert, P. Carmeliet, F. L. Gervasio, H. Schwalbe, F. Bono
Molecular Mechanism Of Ssr128129E, An Extracellularly Acting, Small-Molecule, Allosteric Inhibitor Of Fgf Recepto Signaling.
Cancer Cell V. 23 489 2013
PubMed-ID: 23597563  |  Reference-DOI: 10.1016/J.CCR.2013.02.018

(-) Compounds

Molecule 1 - FIBROBLAST GROWTH FACTOR RECEPTOR 2
    Chains: A
    EC Number: 2.7.10.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 147-366
    Gene: BEK, FGFR2, KGFR, KSAM
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: FGFR-2, K-SAM, KGFR, KERATINOCYTE GROWTH FACTOR RECEPTOR
 
Molecule 2 - FIBROBLAST GROWTH FACTOR 1
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 21-155
    Gene: FGF1, FGFA
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: FGF-1, ACIDIC FIBROBLAST GROWTH FACTOR, AFGF, ENDOTHELIAL CELL GROWTH FACTOR, ECGF, HEPARIN-BINDING GROWTH FACTOR 1, HBGF-1

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4J23)

(-) Sites  (0, 0)

(no "Site" information available for 4J23)

(-) SS Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1A:179 -A:231
2A:278 -A:342

(-) Cis Peptide Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1Asn A:184 -Pro A:185
2Leu A:262 -Pro A:263
3Tyr A:281 -Ser A:282
4Glu A:325 -Val A:326
5Lys B:133 -Arg B:134
6Gly B:141 -Gln B:142

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4J23)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4J23)

(-) Exons   (0, 0)

(no "Exon" information available for 4J23)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:198
                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .............eee.......eee............eee...............ee....eee....hhhhheeeeee........eeeeeee.......................................ee..eee.....eee...........................eee..ee........eee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4j23 A 153 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVL 360
                                   162       172       182       192       202       212       222       232       242       252       262       272       282       292   ||  312       322       332       342       352        
                                                                                                                                                                         296|                                                     
                                                                                                                                                                          307                                                     


Chain B from PDB  Type:PROTEIN  Length:134
                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee......eee.....eee..........eeeee....eeeeee.....eee.......eee.......eee.ee.....ee...................................eeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4j23 B  22 NYKKPKLLYCSNGGHFLRILPDGTVDGTRDRSDQHIQLQLSAESVGEVYIKSTETGQYLAMDTDGLLYGSQTPNEECLFLERLEENHYNTYISKKHAEKNWFVGLKKNGSCKRGPRTHYGQKAILFLPLPVSSD 155
                                    31        41        51        61        71        81        91       101       111       121       131       141       151
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4J23)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4J23)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4J23)

(-) Gene Ontology  (164, 190)

Asymmetric/Biological Unit(hide GO term definitions)

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  Ligands, Modified Residues, Ions
(no "Ligands, Modified Residues, Ions" information available for 4j23)
 
  Sites
(no "Sites" information available for 4j23)
 
  Cis Peptide Bonds
    Asn A:184 - Pro A:185   [ RasMol ]  
    Glu A:325 - Val A:326   [ RasMol ]  
    Gly B:141 - Gln B:142   [ RasMol ]  
    Leu A:262 - Pro A:263   [ RasMol ]  
    Lys B:133 - Arg B:134   [ RasMol ]  
    Tyr A:281 - Ser A:282   [ RasMol ]  
 

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  4j23
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  FGF1_HUMAN | P05230
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  FGFR2_HUMAN | P21802
    Comparative Protein Structure Models: ModBase
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  2.7.10.1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FGF1_HUMAN | P05230: 1axm 1djs 1dzc 1dzd 1e0o 1evt 1hkn 1jqz 1jt3 1jt4 1jt5 1jt7 1jtc 1jy0 1k5u 1k5v 1m16 1nzk 1p63 1pzz 1q03 1q04 1qct 1rg8 1rml 1ry7 1yto 1z2v 1z4s 2afg 2aqz 2axm 2erm 2hw9 2hwa 2hwm 2hz9 2k43 2k4a 2k8r 2ki4 2ki6 2ntd 2q9x 2rq9 3b9u 3ba4 3ba5 3ba7 3bad 3bag 3bah 3bao 3baq 3bau 3bav 3bb2 3cqa 3crg 3crh 3cri 3cu1 3fgm 3fj8 3fj9 3fja 3fjb 3fjc 3fjd 3fje 3fjf 3fjh 3fji 3fjj 3fjk 3hom 3jut 3k1x 3o3q 3oj2 3ojm 3ojv 3ud7 3ud8 3ud9 3uda 4q91 4q9g 4q9p 4qal 4qbc 4qbv 4qc4 4qo3 4xki 4yol
        FGFR2_HUMAN | P21802: 1djs 1e0o 1ev2 1gjo 1ii4 1iil 1nun 1oec 1wvz 2fdb 2psq 2pvf 2pvy 2pwl 2py3 2pz5 2pzp 2pzr 2q0b 3b2t 3caf 3cly 3cu1 3dar 3euu 3oj2 3ojm 3ri1 4j95 4j96 4j97 4j98 4j99 4wv1 5eg3 5ugl 5ugx 5uhn 5ui0

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4J23)