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(-) Description

Title :  STRUCTURE OF U3-55K
 
Authors :  L. Zhang, J. Lin, K. Ye
Date :  31 Jan 13  (Deposition) - 05 Jun 13  (Release) - 05 Jun 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A
Keywords :  Beta-Propeller, Wd Domain, Rna Binding Protein, Preribosome (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Zhang, J. Lin, K. Ye
Structural And Functional Analysis Of The U3 Snorna Binding Protein Rrp9.
Rna V. 19 701 2013
PubMed-ID: 23509373  |  Reference-DOI: 10.1261/RNA.037580.112

(-) Compounds

Molecule 1 - U3 SMALL NUCLEOLAR RNA-INTERACTING PROTEIN 2
    Chains: A
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Cell Line: HIGH FIVE
    Expression System Common: FALL ARMYWORM
    Expression System Plasmid: PFASTBAC
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Fragment: WD DOMAIN, UNP RESIDUES 137-475
    Gene: RRP9, RNU3IP2, U355K
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: RRP9 HOMOLOG, U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN- ASSOCIATED 55 KDA PROTEIN, U3 SNORNP-ASSOCIATED 55 KDA PROTEIN, U3- 55K

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4J0W)

(-) Sites  (0, 0)

(no "Site" information available for 4J0W)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4J0W)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4J0W)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4J0W)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4J0W)

(-) Exons   (0, 0)

(no "Exon" information available for 4J0W)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:327
                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeee.....eeeeee.....eeeeee....eeeee.....eeeee............eeeeee.....eeeeee....eeeee....eeeeee......eeeeee.....eeeeee...eeeeee.hhheeeeeee.......eeee....eeeee.hhh.eeeeee....eeeeee.....eeeeeeee..eeeeee....eeeee.......eee.....ee......ee....eeee.....eeeee....eeeeeee.hhhh.eeeeeeee...eeeeeee.....eeeeeee................eeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4j0w A 133 GPEAADIRVLRGHQLSITCLVVTPDDSAIFSAAKDCSIIKWSVESGRKLHVIPRAGKPPGHSSHVLCMAISSDGKYLASGDRSKLILIWEAQSCQHLYTFTGHRDAVSGLAFRRGTHQLYSTSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEESQLVFYGHQGSIDCIHLINEEHMVSGADDGSVALWGLSKKRPLALQREAHGLRGEPGLEQPFWISSVAALLNTDLVATGSHSSCVRLWQCGEGFRQLDLLCDIPLVGFINSLKFSSSGDFLVAGVGQEHRLGRWWRIKEARNSVCIIPL 464
                                   142       152       162       172       182    || 197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       
                                                                                187|                                                                                                                                                                                                                                                                               
                                                                                 193
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4J0W)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4J0W)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4J0W)

(-) Gene Ontology  (9, 9)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        U3IP2_HUMAN | O43818: 4jxm

(-) Related Entries Specified in the PDB File

4j0x