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(-) Description

Title :  CRYSTAL STRUCTURE OF ZNF217 BOUND TO DNA
 
Authors :  M. S. Vandevenne, D. A. Jacques, J. M. Guss, J. P. Mackay
Date :  16 Jan 13  (Deposition) - 27 Feb 13  (Release) - 06 Mar 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Zinc Finger, Transcription Factor, Metal Binding Protein-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. S. Vandevenne, D. A. Jacques, C. Artuz, C. D. Nguyen, A. H. Y. Kwan, D. J. Segal, J. M. Matthews, M. Crossley, J. M. Guss, J. P. Mackay
New Insights Into Dna Recognition By Zinc Fingers Revealed By Structural Analysis Of Znf217
J. Biol. Chem. 2013
PubMed: search  |  Reference-DOI: 10.1074/JBC.M112.441451

(-) Compounds

Molecule 1 - 5'-D(*TP*TP*TP*GP*CP*AP*GP*AP*AP*TP*CP*GP*AP*TP*TP*CP*TP*GP *CP*A)-3'
    Chains: A
    Engineered: YES
    Synthetic: YES
 
Molecule 2 - 5'-D(*AP*AP*TP*GP*CP*AP*GP*AP*AP*TP*CP*GP*AP*TP*TP*CP*TP*GP *CP*A)-3'
    Chains: B
    Engineered: YES
    Synthetic: YES
 
Molecule 3 - ZINC FINGER PROTEIN 217
    Chains: C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMAL
    Expression System Strain: ROSETTA 2
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: ZINC FINGERS 6 AND 7 (UNP RESIDUES 469-523)
    Gene: ZNF217, ZABC1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: TRANSCRIPTION FACTOR ZNF217

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 9)

Asymmetric/Biological Unit (2, 9)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2ZN8Ligand/IonZINC ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREDG B:12 , HOH B:210BINDING SITE FOR RESIDUE ZN B 101
2AC2SOFTWAREDT B:17 , HOH B:211 , HOH D:714 , HOH D:718BINDING SITE FOR RESIDUE ZN B 102
3AC3SOFTWARECYS C:501 , CYS C:504 , HIS C:517 , HIS C:522BINDING SITE FOR RESIDUE ZN C 601
4AC4SOFTWARECYS C:473 , CYS C:476 , HIS C:489 , HIS C:493BINDING SITE FOR RESIDUE ZN C 602
5AC5SOFTWAREHIS C:521BINDING SITE FOR RESIDUE ZN C 603
6AC6SOFTWARECYS D:501 , CYS D:504 , HIS D:517 , HIS D:522BINDING SITE FOR RESIDUE ZN D 601
7AC7SOFTWARECYS D:473 , CYS D:476 , HIS D:489 , HIS D:493BINDING SITE FOR RESIDUE ZN D 602
8AC8SOFTWAREGLU C:502 , GLU D:472 , GLY D:477 , HIS D:521BINDING SITE FOR RESIDUE ZN D 603

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4IS1)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4IS1)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4IS1)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4IS1)

(-) Exons   (0, 0)

(no "Exon" information available for 4IS1)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:DNA  Length:20
                                                    
                 4is1 A   1 TTTGCAGAATCGATTCTGCA  20
                                    10        20


Chain B from PDB  Type:DNA  Length:20
                                                    
                 4is1 B   1 AATGCAGAATCGATTCTGCA  20
                                    10        20


Chain C from PDB  Type:PROTEIN  Length:52
                                                                                    
               SCOP domains ---------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhh...ee......ee.hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------- Transcript
                 4is1 C 471 RECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 522
                                   480       490       500       510       520  


Chain D from PDB  Type:PROTEIN  Length:54
                                                                                      
               SCOP domains ------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------ Pfam domains
         Sec.struct. author ............hhhhhhhhhhhhhh...ee......ee.hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------ Transcript
                 4is1 D 470 SRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK 523
                                   479       489       499       509       519
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4IS1)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4IS1)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4IS1)

(-) Gene Ontology  (17, 17)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ZN217_HUMAN | O75362: 2hu2 3uk3 4f2j

(-) Related Entries Specified in the PDB File

4f2j CRYSTAL STRUCTURE OF ZNF217 BOUND TO DNA, P6522 CRYSTAL FORM