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(-) Description

Title :  CRYSTAL STRUCTURE OF ZNF217 BOUND TO DNA, P6522 CRYSTAL FORM
 
Authors :  M. S. Vandevenne, D. A. Jacques, J. M. Guss, J. P. Mackay
Date :  08 May 12  (Deposition) - 27 Feb 13  (Release) - 04 Sep 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.64
Chains :  Asym. Unit :  A,C
Biol. Unit 1:  A,C  (2x)
Keywords :  Zinc Finger, Transcription Factor, Dna Binding, Nucleus, Metal Binding Protein-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. S. Vandevenne, D. A. Jacques, C. Artuz, C. D. Nguyen, A. H. Kwan, D. J. Segal, J. M. Matthews, M. Crossley, J. M. Guss, J. P. Mackay
New Insights Into Dna Recognition By Zinc Fingers Revealed By Structural Analysis Of The Oncoprotein Znf217
J. Biol. Chem. V. 288 10616 2013
PubMed-ID: 23436653  |  Reference-DOI: 10.1074/JBC.M112.441451

(-) Compounds

Molecule 1 - 5'-D(*TP*TP*TP*GP*CP*AP*GP*AP*AP*TP*CP*GP*AP*TP*TP*CP*TP*GP *CP*A)-3'
    Chains: A
    Engineered: YES
    Synthetic: YES
 
Molecule 2 - ZINC FINGER PROTEIN 217
    Chains: C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMAL
    Expression System Strain: ROSETTA 2
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: ZINC FINGERS 6 AND 7 (UNP RESIDUES 469-523)
    Gene: ZNF217, ZABC1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: TRANSCRIPTION FACTOR ZNF217

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AC
Biological Unit 1 (2x): AC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1ZN2Ligand/IonZINC ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS C:501 , CYS C:504 , HIS C:517 , HIS C:522BINDING SITE FOR RESIDUE ZN C 601
2AC2SOFTWARECYS C:473 , CYS C:476 , HIS C:489 , HIS C:493BINDING SITE FOR RESIDUE ZN C 602

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4F2J)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4F2J)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4F2J)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4F2J)

(-) Exons   (0, 0)

(no "Exon" information available for 4F2J)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:DNA  Length:20
                                                    
                 4f2j A   0 TTTGCAGAATCGATTCTGCA  19
                                     9        19


Chain C from PDB  Type:PROTEIN  Length:52
                                                                                    
               SCOP domains ---------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhh...ee......ee.hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------- Transcript
                 4f2j C 471 RECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 522
                                   480       490       500       510       520
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4F2J)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4F2J)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4F2J)

(-) Gene Ontology  (17, 17)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ZN217_HUMAN | O75362: 2hu2 3uk3 4is1

(-) Related Entries Specified in the PDB File

3uk3 CRYSTAL STRUCTURE OF ZNF217 BOUND TO DNA