Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
(-)Biological Unit 3
(-)Biological Unit 4
(-)Biological Unit 5
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)
Image Biological Unit 3
Biological Unit 3  (Jmol Viewer)
Image Biological Unit 4
Biological Unit 4  (Jmol Viewer)
Image Biological Unit 5
Biological Unit 5  (Jmol Viewer)

(-) Description

Title :  THE CRYSTAL STRUCTURE OF A LARGE INSERT IN RNA POLYMERASE (RPOC) SUBUNIT FROM E. COLI
 
Authors :  V. Bhandari, S. N. Sugiman-Marangos, H. S. Naushad, R. S. Gupta, M. S. Ju
Date :  14 Jan 13  (Deposition) - 13 Feb 13  (Release) - 13 Feb 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B,C,D,E
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  E  (1x)
Keywords :  Function Of Insertion Is Unknown, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. Bhandari, S. N. Sugiman-Marangos, H. S. Naushad, R. S. Gupta, M. S. Junop
The Crystal Structure Of A Large Insert In Rna Polymerase (Rpoc) Subunit From E. Coli
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA'
    Chains: A, B, C, D, E
    EC Number: 2.7.7.6
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-15B(+)
    Expression System Strain: B834
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 932-1141
    Gene: B3988, JW3951, RPOC, RPOC SUBUNIT BETA', TABB
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 83333
    Strain: K12 MG1655
    Synonym: RNAP SUBUNIT BETA', RNA POLYMERASE SUBUNIT BETA', TRANSCRIPTASE SUBUNIT BETA'

 Structural Features

(-) Chains, Units

  12345
Asymmetric Unit : ABCDE
Biological Unit 1 (1x): A    
Biological Unit 2 (1x):  B   
Biological Unit 3 (1x):   C  
Biological Unit 4 (1x):    D 
Biological Unit 5 (1x):     E

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 78)

Asymmetric Unit (3, 78)
No.NameCountTypeFull Name
1IOD56Ligand/IonIODIDE ION
2MSE15Mod. Amino AcidSELENOMETHIONINE
3NA7Ligand/IonSODIUM ION
Biological Unit 1 (2, 18)
No.NameCountTypeFull Name
1IOD15Ligand/IonIODIDE ION
2MSE3Mod. Amino AcidSELENOMETHIONINE
3NA-1Ligand/IonSODIUM ION
Biological Unit 2 (2, 16)
No.NameCountTypeFull Name
1IOD13Ligand/IonIODIDE ION
2MSE3Mod. Amino AcidSELENOMETHIONINE
3NA-1Ligand/IonSODIUM ION
Biological Unit 3 (2, 14)
No.NameCountTypeFull Name
1IOD11Ligand/IonIODIDE ION
2MSE3Mod. Amino AcidSELENOMETHIONINE
3NA-1Ligand/IonSODIUM ION
Biological Unit 4 (2, 16)
No.NameCountTypeFull Name
1IOD13Ligand/IonIODIDE ION
2MSE3Mod. Amino AcidSELENOMETHIONINE
3NA-1Ligand/IonSODIUM ION
Biological Unit 5 (2, 7)
No.NameCountTypeFull Name
1IOD4Ligand/IonIODIDE ION
2MSE3Mod. Amino AcidSELENOMETHIONINE
3NA-1Ligand/IonSODIUM ION

(-) Sites  (55, 55)

Asymmetric Unit (55, 55)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:108BINDING SITE FOR RESIDUE IOD A 301
02AC2SOFTWAREGLN A:203BINDING SITE FOR RESIDUE IOD A 303
03AC3SOFTWAREGLY A:95 , GLU A:98BINDING SITE FOR RESIDUE IOD A 304
04AC4SOFTWAREASN A:51BINDING SITE FOR RESIDUE IOD A 305
05AC5SOFTWAREVAL A:56BINDING SITE FOR RESIDUE IOD A 306
06AC6SOFTWARELYS A:168 , THR E:136 , ARG E:137 , HOH E:461 , HOH E:462BINDING SITE FOR RESIDUE IOD A 307
07AC7SOFTWARETHR A:65 , HOH A:468 , HOH A:526BINDING SITE FOR RESIDUE IOD A 308
08AC8SOFTWAREGLU A:70 , LYS A:81 , SER A:83 , TYR A:84 , LYS A:85BINDING SITE FOR RESIDUE IOD A 309
09AC9SOFTWAREMSE A:114 , GLN A:215 , HOH B:452BINDING SITE FOR RESIDUE IOD A 310
10BC1SOFTWAREARG A:67BINDING SITE FOR RESIDUE IOD A 311
11BC2SOFTWAREGLN A:197 , ARG D:67BINDING SITE FOR RESIDUE IOD A 312
12BC3SOFTWARESER A:54 , ASP A:96BINDING SITE FOR RESIDUE IOD A 313
13BC4SOFTWARESER B:83BINDING SITE FOR RESIDUE IOD A 315
14BC5SOFTWARESER A:37 , ASN A:108 , TRP A:109 , HOH A:451 , HOH A:455BINDING SITE FOR RESIDUE NA A 316
15BC6SOFTWAREVAL A:56 , SER A:205 , SER A:206 , HOH A:456BINDING SITE FOR RESIDUE NA A 317
16BC7SOFTWAREHOH A:449 , VAL B:56BINDING SITE FOR RESIDUE IOD B 301
17BC8SOFTWAREVAL E:91 , ASN E:108BINDING SITE FOR RESIDUE IOD B 303
18BC9SOFTWARETHR B:113 , HOH B:413BINDING SITE FOR RESIDUE IOD B 304
19CC1SOFTWARETHR B:65BINDING SITE FOR RESIDUE IOD B 305
20CC2SOFTWAREARG B:67 , HOH B:466BINDING SITE FOR RESIDUE IOD B 307
21CC3SOFTWAREALA B:172 , HOH B:431BINDING SITE FOR RESIDUE IOD B 308
22CC4SOFTWARESER B:121 , HOH B:416BINDING SITE FOR RESIDUE IOD B 309
23CC5SOFTWARESER B:121 , HOH B:426 , ARG C:79BINDING SITE FOR RESIDUE IOD B 310
24CC6SOFTWAREASN B:108 , HOH B:430 , HOH B:445BINDING SITE FOR RESIDUE IOD B 311
25CC7SOFTWARESER B:54 , ASP B:96BINDING SITE FOR RESIDUE IOD B 312
26CC8SOFTWAREHOH A:530 , SER B:146BINDING SITE FOR RESIDUE IOD B 313
27CC9SOFTWAREHOH A:406 , VAL B:56 , SER B:205 , SER B:206BINDING SITE FOR RESIDUE NA B 314
28DC1SOFTWAREVAL C:56 , SER E:153BINDING SITE FOR RESIDUE IOD C 301
29DC2SOFTWAREHOH C:465 , GLN E:215BINDING SITE FOR RESIDUE IOD C 302
30DC3SOFTWAREASN C:68BINDING SITE FOR RESIDUE IOD C 303
31DC4SOFTWAREASN C:108BINDING SITE FOR RESIDUE IOD C 304
32DC5SOFTWARETHR C:65BINDING SITE FOR RESIDUE IOD C 305
33DC6SOFTWARETHR C:113 , ARG C:212BINDING SITE FOR RESIDUE IOD C 306
34DC7SOFTWARESER C:54BINDING SITE FOR RESIDUE IOD C 309
35DC8SOFTWAREGLU D:199BINDING SITE FOR RESIDUE IOD C 310
36DC9SOFTWAREARG C:67BINDING SITE FOR RESIDUE IOD C 311
37EC1SOFTWARESER C:66 , ARG C:67 , ASN C:68 , THR C:69 , VAL C:86 , PRO C:87 , TYR C:88 , GLU D:199BINDING SITE FOR RESIDUE NA C 312
38EC2SOFTWAREVAL C:56 , SER C:205 , SER C:206 , HOH C:464BINDING SITE FOR RESIDUE NA C 313
39EC3SOFTWAREHOH C:468 , VAL D:202 , GLN D:203BINDING SITE FOR RESIDUE IOD D 301
40EC4SOFTWAREHOH D:431BINDING SITE FOR RESIDUE IOD D 302
41EC5SOFTWARETHR D:136 , ARG D:137 , HOH D:476BINDING SITE FOR RESIDUE IOD D 304
42EC6SOFTWAREASP D:200BINDING SITE FOR RESIDUE IOD D 305
43EC7SOFTWAREASN D:108BINDING SITE FOR RESIDUE IOD D 306
44EC8SOFTWAREHOH D:442BINDING SITE FOR RESIDUE IOD D 307
45EC9SOFTWAREASP D:183BINDING SITE FOR RESIDUE IOD D 309
46FC1SOFTWAREARG D:67BINDING SITE FOR RESIDUE IOD D 310
47FC2SOFTWAREGLN C:215BINDING SITE FOR RESIDUE IOD D 311
48FC3SOFTWAREMSE D:129BINDING SITE FOR RESIDUE IOD D 312
49FC4SOFTWAREHOH A:506 , GLN D:215BINDING SITE FOR RESIDUE IOD D 313
50FC5SOFTWAREVAL D:56 , SER D:205 , SER D:206 , HOH D:417BINDING SITE FOR RESIDUE NA D 314
51FC6SOFTWAREGLN B:215 , SER E:58BINDING SITE FOR RESIDUE IOD E 301
52FC7SOFTWAREASP E:128BINDING SITE FOR RESIDUE IOD E 302
53FC8SOFTWAREALA E:172BINDING SITE FOR RESIDUE IOD E 303
54FC9SOFTWAREASP E:96 , HOH E:482BINDING SITE FOR RESIDUE IOD E 304
55GC1SOFTWAREVAL E:56 , SER E:205 , SER E:206BINDING SITE FOR RESIDUE NA E 305

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4IQZ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4IQZ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4IQZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4IQZ)

(-) Exons   (0, 0)

(no "Exon" information available for 4IQZ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:178
                                                                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eee....eeeeee...eee.....eee.....eeeee.....eeeeee.....ee......ee....eeee....eeeee....eeeeee.......eeee...eeee.hhhhh..hhhhh..eeeee................eee.....ee......ee....eeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4iqz A  34 AAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTmPVITEVSGFVRFTDmIDGQTITRQTLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDmPAQYFLPGKAIVQLEDGVQISSGDTLARIPQE 216
                                    43        53        63        73        83        93       103       113|      123     | 133     ||148       158       168       178     | 188       198       208        
                                                                                                          114-MSE        129-MSE   139|                                    184-MSE                            
                                                                                                                                    145                                                                       


Chain B from PDB  Type:PROTEIN  Length:176
                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee....eeeeee...eee.....eee....eeeeee....eeeee....ee......ee....eeee....eeeee....eeeeee.......eeeee.....eeeee........hhhhh..eeeee................eee.....ee......ee....eeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4iqz B  37 SSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTmPVITEVSGFVRFTDmIDGQTITRQTDETGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDmPAQYFLPGKAIVQLEDGVQISSGDTLARIPQE 216
                                    46        56        66        79        89        99       109    |  119       129       139 ||    150       160       170       180   |   190       200       210      
                                                                 75|                                114-MSE        129-MSE     141|                                      184-MSE                            
                                                                  79                                                            143                                                                         


Chain C from PDB  Type:PROTEIN  Length:176
                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee....eeeeee...eee.....eee....eeeeee.....eeeeeee....ee......ee....eeee....eeeee....eeeeee.......eee........eee.hhhhh.......eeeee................eee.....ee......ee....eeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4iqz C  36 ESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTmPVITEVSGFVRFTDmIDGQTITRQTDTGLSSLVVLDSAERTGKDLRPALKIVDAQGNDVLIPGTDmPAQYFLPGKAIVQLEDGVQISSGDTLARIPQ 215
                                    45        55        65        75        85        95       105       115       125   |   135    || 147       157|      169       179    |  189       199       209      
                                                                                                        114-MSE        129-MSE    140|           157|                     184-MSE                           
                                                                                                                                   143            160                                                       


Chain D from PDB  Type:PROTEIN  Length:146
                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee........eee.....eee....eee..eee....ee........eeee....eeeee....eeeeee.......eeee...eeee......eeeee................eee.....ee......ee....eeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4iqz D  37 SSIQVKKLSNVKSVVNSSGKLVITSRNTELKSYKVPYGAVLAKGDGEGETVANWDPHTmPVITEVSGFVRFTDmIDGQTITRQTLSSLVVLDDLRPALKIVDAQGNDVLIPGTDmPAQYFLPGKAIVQLEDGVQISSGDTLARIPQ 215
                                 || 51        61        71||      91      |105       115       125   |   135   ||  150 ||    169       179    |  189       199       209      
                                42|                      72|             98|        114-MSE        129-MSE   139|    152|                   184-MSE                           
                                 48                       83             103                                  145     162                                                     


Chain E from PDB  Type:PROTEIN  Length:175
                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee....eeeeee...eee.....eee....eeeeee.....eeeee....ee......ee....eeee...eeeee....eeeeee.......eeeee......eeeee.hhhhhhhhhh....eeeee..............eee.....ee......ee....eeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4iqz E  37 SSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFTKESYKVPYGAVLAKGDGEQVAGGETVANWDHTmPVITEVSGFVRFTDmIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLITDmPAQYFLPGKAIVQLEDGVQISSGDTLARIPQE 216
                                    46        56        66        76||      88        98       108 || |  119       129       139       149       159       169       179| |    191       201       211     
                                                                   77|                           110| |            129-MSE                                           179| |                                
                                                                    80                            112 |                                                               182 |                                
                                                                                                    114-MSE                                                             184-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4IQZ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4IQZ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4IQZ)

(-) Gene Ontology  (10, 10)

Asymmetric Unit(hide GO term definitions)

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    IOD  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MSE  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    NA  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
    BC8  [ RasMol ]  +environment [ RasMol ]
    BC9  [ RasMol ]  +environment [ RasMol ]
    CC1  [ RasMol ]  +environment [ RasMol ]
    CC2  [ RasMol ]  +environment [ RasMol ]
    CC3  [ RasMol ]  +environment [ RasMol ]
    CC4  [ RasMol ]  +environment [ RasMol ]
    CC5  [ RasMol ]  +environment [ RasMol ]
    CC6  [ RasMol ]  +environment [ RasMol ]
    CC7  [ RasMol ]  +environment [ RasMol ]
    CC8  [ RasMol ]  +environment [ RasMol ]
    CC9  [ RasMol ]  +environment [ RasMol ]
    DC1  [ RasMol ]  +environment [ RasMol ]
    DC2  [ RasMol ]  +environment [ RasMol ]
    DC3  [ RasMol ]  +environment [ RasMol ]
    DC4  [ RasMol ]  +environment [ RasMol ]
    DC5  [ RasMol ]  +environment [ RasMol ]
    DC6  [ RasMol ]  +environment [ RasMol ]
    DC7  [ RasMol ]  +environment [ RasMol ]
    DC8  [ RasMol ]  +environment [ RasMol ]
    DC9  [ RasMol ]  +environment [ RasMol ]
    EC1  [ RasMol ]  +environment [ RasMol ]
    EC2  [ RasMol ]  +environment [ RasMol ]
    EC3  [ RasMol ]  +environment [ RasMol ]
    EC4  [ RasMol ]  +environment [ RasMol ]
    EC5  [ RasMol ]  +environment [ RasMol ]
    EC6  [ RasMol ]  +environment [ RasMol ]
    EC7  [ RasMol ]  +environment [ RasMol ]
    EC8  [ RasMol ]  +environment [ RasMol ]
    EC9  [ RasMol ]  +environment [ RasMol ]
    FC1  [ RasMol ]  +environment [ RasMol ]
    FC2  [ RasMol ]  +environment [ RasMol ]
    FC3  [ RasMol ]  +environment [ RasMol ]
    FC4  [ RasMol ]  +environment [ RasMol ]
    FC5  [ RasMol ]  +environment [ RasMol ]
    FC6  [ RasMol ]  +environment [ RasMol ]
    FC7  [ RasMol ]  +environment [ RasMol ]
    FC8  [ RasMol ]  +environment [ RasMol ]
    FC9  [ RasMol ]  +environment [ RasMol ]
    GC1  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 4iqz)
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]
    Biological Unit 3  [ Jena3D ]
    Biological Unit 4  [ Jena3D ]
    Biological Unit 5  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format | Biol. Unit 2 PNG format | Biol. Unit 3 PNG format | Biol. Unit 4 PNG format | Biol. Unit 5 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  4iqz
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  RPOC_ECOLI | P0A8T7
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  2.7.7.6
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  RPOC_ECOLI | P0A8T7
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RPOC_ECOLI | P0A8T7: 2auk 2lmc 3iyd 3lu0 4jk1 4jk2 4kmu 4kn4 4kn7 4mex 4mey 4xsx 4xsy 4xsz 4yg2 4yln 4ylo 4ylp 4zh2 4zh3 4zh4 5byh 5ezk 5ipl 5ipm 5ipn 5my1 5nsr 5nss 5uac 5uag 5uah 5uaj 5ual 5uaq 5up6 5upc 5vsw 5w1s 5w1t

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4IQZ)