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4IQZ
Asym. Unit
Info
Asym.Unit (279 KB)
Biol.Unit 1 (60 KB)
Biol.Unit 2 (59 KB)
Biol.Unit 3 (57 KB)
Biol.Unit 4 (49 KB)
Biol.Unit 5 (55 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF A LARGE INSERT IN RNA POLYMERASE (RPOC) SUBUNIT FROM E. COLI
Authors
:
V. Bhandari, S. N. Sugiman-Marangos, H. S. Naushad, R. S. Gupta, M. S. Ju
Date
:
14 Jan 13 (Deposition) - 13 Feb 13 (Release) - 13 Feb 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Keywords
:
Function Of Insertion Is Unknown, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. Bhandari, S. N. Sugiman-Marangos, H. S. Naushad, R. S. Gupta, M. S. Junop
The Crystal Structure Of A Large Insert In Rna Polymerase (Rpoc) Subunit From E. Coli
To Be Published
[
close entry info
]
Hetero Components
(3, 78)
Info
All Hetero Components
1a: IODIDE ION (IODa)
1aa: IODIDE ION (IODaa)
1ab: IODIDE ION (IODab)
1ac: IODIDE ION (IODac)
1ad: IODIDE ION (IODad)
1ae: IODIDE ION (IODae)
1af: IODIDE ION (IODaf)
1ag: IODIDE ION (IODag)
1ah: IODIDE ION (IODah)
1ai: IODIDE ION (IODai)
1aj: IODIDE ION (IODaj)
1ak: IODIDE ION (IODak)
1al: IODIDE ION (IODal)
1am: IODIDE ION (IODam)
1an: IODIDE ION (IODan)
1ao: IODIDE ION (IODao)
1ap: IODIDE ION (IODap)
1aq: IODIDE ION (IODaq)
1ar: IODIDE ION (IODar)
1as: IODIDE ION (IODas)
1at: IODIDE ION (IODat)
1au: IODIDE ION (IODau)
1av: IODIDE ION (IODav)
1aw: IODIDE ION (IODaw)
1ax: IODIDE ION (IODax)
1ay: IODIDE ION (IODay)
1az: IODIDE ION (IODaz)
1b: IODIDE ION (IODb)
1ba: IODIDE ION (IODba)
1bb: IODIDE ION (IODbb)
1bc: IODIDE ION (IODbc)
1bd: IODIDE ION (IODbd)
1c: IODIDE ION (IODc)
1d: IODIDE ION (IODd)
1e: IODIDE ION (IODe)
1f: IODIDE ION (IODf)
1g: IODIDE ION (IODg)
1h: IODIDE ION (IODh)
1i: IODIDE ION (IODi)
1j: IODIDE ION (IODj)
1k: IODIDE ION (IODk)
1l: IODIDE ION (IODl)
1m: IODIDE ION (IODm)
1n: IODIDE ION (IODn)
1o: IODIDE ION (IODo)
1p: IODIDE ION (IODp)
1q: IODIDE ION (IODq)
1r: IODIDE ION (IODr)
1s: IODIDE ION (IODs)
1t: IODIDE ION (IODt)
1u: IODIDE ION (IODu)
1v: IODIDE ION (IODv)
1w: IODIDE ION (IODw)
1x: IODIDE ION (IODx)
1y: IODIDE ION (IODy)
1z: IODIDE ION (IODz)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
2o: SELENOMETHIONINE (MSEo)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
3c: SODIUM ION (NAc)
3d: SODIUM ION (NAd)
3e: SODIUM ION (NAe)
3f: SODIUM ION (NAf)
3g: SODIUM ION (NAg)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
IOD
56
Ligand/Ion
IODIDE ION
2
MSE
15
Mod. Amino Acid
SELENOMETHIONINE
3
NA
7
Ligand/Ion
SODIUM ION
[
close Hetero Component info
]
Sites
(55, 55)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
55: GC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:108
BINDING SITE FOR RESIDUE IOD A 301
02
AC2
SOFTWARE
GLN A:203
BINDING SITE FOR RESIDUE IOD A 303
03
AC3
SOFTWARE
GLY A:95 , GLU A:98
BINDING SITE FOR RESIDUE IOD A 304
04
AC4
SOFTWARE
ASN A:51
BINDING SITE FOR RESIDUE IOD A 305
05
AC5
SOFTWARE
VAL A:56
BINDING SITE FOR RESIDUE IOD A 306
06
AC6
SOFTWARE
LYS A:168 , THR E:136 , ARG E:137 , HOH E:461 , HOH E:462
BINDING SITE FOR RESIDUE IOD A 307
07
AC7
SOFTWARE
THR A:65 , HOH A:468 , HOH A:526
BINDING SITE FOR RESIDUE IOD A 308
08
AC8
SOFTWARE
GLU A:70 , LYS A:81 , SER A:83 , TYR A:84 , LYS A:85
BINDING SITE FOR RESIDUE IOD A 309
09
AC9
SOFTWARE
MSE A:114 , GLN A:215 , HOH B:452
BINDING SITE FOR RESIDUE IOD A 310
10
BC1
SOFTWARE
ARG A:67
BINDING SITE FOR RESIDUE IOD A 311
11
BC2
SOFTWARE
GLN A:197 , ARG D:67
BINDING SITE FOR RESIDUE IOD A 312
12
BC3
SOFTWARE
SER A:54 , ASP A:96
BINDING SITE FOR RESIDUE IOD A 313
13
BC4
SOFTWARE
SER B:83
BINDING SITE FOR RESIDUE IOD A 315
14
BC5
SOFTWARE
SER A:37 , ASN A:108 , TRP A:109 , HOH A:451 , HOH A:455
BINDING SITE FOR RESIDUE NA A 316
15
BC6
SOFTWARE
VAL A:56 , SER A:205 , SER A:206 , HOH A:456
BINDING SITE FOR RESIDUE NA A 317
16
BC7
SOFTWARE
HOH A:449 , VAL B:56
BINDING SITE FOR RESIDUE IOD B 301
17
BC8
SOFTWARE
VAL E:91 , ASN E:108
BINDING SITE FOR RESIDUE IOD B 303
18
BC9
SOFTWARE
THR B:113 , HOH B:413
BINDING SITE FOR RESIDUE IOD B 304
19
CC1
SOFTWARE
THR B:65
BINDING SITE FOR RESIDUE IOD B 305
20
CC2
SOFTWARE
ARG B:67 , HOH B:466
BINDING SITE FOR RESIDUE IOD B 307
21
CC3
SOFTWARE
ALA B:172 , HOH B:431
BINDING SITE FOR RESIDUE IOD B 308
22
CC4
SOFTWARE
SER B:121 , HOH B:416
BINDING SITE FOR RESIDUE IOD B 309
23
CC5
SOFTWARE
SER B:121 , HOH B:426 , ARG C:79
BINDING SITE FOR RESIDUE IOD B 310
24
CC6
SOFTWARE
ASN B:108 , HOH B:430 , HOH B:445
BINDING SITE FOR RESIDUE IOD B 311
25
CC7
SOFTWARE
SER B:54 , ASP B:96
BINDING SITE FOR RESIDUE IOD B 312
26
CC8
SOFTWARE
HOH A:530 , SER B:146
BINDING SITE FOR RESIDUE IOD B 313
27
CC9
SOFTWARE
HOH A:406 , VAL B:56 , SER B:205 , SER B:206
BINDING SITE FOR RESIDUE NA B 314
28
DC1
SOFTWARE
VAL C:56 , SER E:153
BINDING SITE FOR RESIDUE IOD C 301
29
DC2
SOFTWARE
HOH C:465 , GLN E:215
BINDING SITE FOR RESIDUE IOD C 302
30
DC3
SOFTWARE
ASN C:68
BINDING SITE FOR RESIDUE IOD C 303
31
DC4
SOFTWARE
ASN C:108
BINDING SITE FOR RESIDUE IOD C 304
32
DC5
SOFTWARE
THR C:65
BINDING SITE FOR RESIDUE IOD C 305
33
DC6
SOFTWARE
THR C:113 , ARG C:212
BINDING SITE FOR RESIDUE IOD C 306
34
DC7
SOFTWARE
SER C:54
BINDING SITE FOR RESIDUE IOD C 309
35
DC8
SOFTWARE
GLU D:199
BINDING SITE FOR RESIDUE IOD C 310
36
DC9
SOFTWARE
ARG C:67
BINDING SITE FOR RESIDUE IOD C 311
37
EC1
SOFTWARE
SER C:66 , ARG C:67 , ASN C:68 , THR C:69 , VAL C:86 , PRO C:87 , TYR C:88 , GLU D:199
BINDING SITE FOR RESIDUE NA C 312
38
EC2
SOFTWARE
VAL C:56 , SER C:205 , SER C:206 , HOH C:464
BINDING SITE FOR RESIDUE NA C 313
39
EC3
SOFTWARE
HOH C:468 , VAL D:202 , GLN D:203
BINDING SITE FOR RESIDUE IOD D 301
40
EC4
SOFTWARE
HOH D:431
BINDING SITE FOR RESIDUE IOD D 302
41
EC5
SOFTWARE
THR D:136 , ARG D:137 , HOH D:476
BINDING SITE FOR RESIDUE IOD D 304
42
EC6
SOFTWARE
ASP D:200
BINDING SITE FOR RESIDUE IOD D 305
43
EC7
SOFTWARE
ASN D:108
BINDING SITE FOR RESIDUE IOD D 306
44
EC8
SOFTWARE
HOH D:442
BINDING SITE FOR RESIDUE IOD D 307
45
EC9
SOFTWARE
ASP D:183
BINDING SITE FOR RESIDUE IOD D 309
46
FC1
SOFTWARE
ARG D:67
BINDING SITE FOR RESIDUE IOD D 310
47
FC2
SOFTWARE
GLN C:215
BINDING SITE FOR RESIDUE IOD D 311
48
FC3
SOFTWARE
MSE D:129
BINDING SITE FOR RESIDUE IOD D 312
49
FC4
SOFTWARE
HOH A:506 , GLN D:215
BINDING SITE FOR RESIDUE IOD D 313
50
FC5
SOFTWARE
VAL D:56 , SER D:205 , SER D:206 , HOH D:417
BINDING SITE FOR RESIDUE NA D 314
51
FC6
SOFTWARE
GLN B:215 , SER E:58
BINDING SITE FOR RESIDUE IOD E 301
52
FC7
SOFTWARE
ASP E:128
BINDING SITE FOR RESIDUE IOD E 302
53
FC8
SOFTWARE
ALA E:172
BINDING SITE FOR RESIDUE IOD E 303
54
FC9
SOFTWARE
ASP E:96 , HOH E:482
BINDING SITE FOR RESIDUE IOD E 304
55
GC1
SOFTWARE
VAL E:56 , SER E:205 , SER E:206
BINDING SITE FOR RESIDUE NA E 305
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
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)
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Sidechain
Hetero
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (279 KB)
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