4IQE - JenaLib

Asymmetric Unit (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF CARBOXYVINYL-CARBOXYPHOSPHONATE PHOSPHORYLMUTASE FROM BACILLUS ANTHRACIS STR. AMES ANCESTOR

Authors :   Y. Kim, N. Maltseva, K Kwon, W. F. Anderson, A. Joachimiak, Csgid, Cent Structural Genomics Of Infectious Diseases (Csgid)

Date :   11 Jan 13 (Deposition) - 23 Jan 13 (Release) - 03 Dec 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.50

Chains :   Asym. Unit : A,B
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: A,B  (2x)

Keywords :   Structural Genomics, Niaid, National Institute Of Allergy And Infectious Diseases, Center For Structural Genomics Of Infectious Diseases, Csgid, Tim Barrel, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Y. Kim, N. Maltseva, K. Kwon, W. F. Anderson, A. Joachimiak, Center For Structural Genomics Of Infectious Diseases (Csgid)
Crystal Structure Of Carboxyvinyl-Carboxyphosphonate Phosphorylmutase From Bacillus Anthracis Str. Ames Ancestor
To Be Published
PubMed: search

Molecule 1 - CARBOXYVINYL-CARBOXYPHOSPHONATE PHOSPHORYLMUTASE
	Chains	:	A, B
	EC Number	:	4.1.3.30
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PMCSG7
	Expression System Strain	:	BL21 MAGIC
	Expression System Taxid	:	511693
	Expression System Vector Type	:	PLASMID
	Gene	:	PRPB, YQIQ
	Organism Common	:	ANTHRAX,ANTHRAX BACTERIUM
	Organism Scientific	:	BACILLUS ANTHRACIS
	Organism Taxid	:	1392
	Strain	:	AMES ANCESTOR
	Synonym	:	METHYLISOCITRATE LYASE

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (2x)	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 12)

No.	Name	Count	Type	Full Name
1	MSE	12	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 1 (1, 12)

No.	Name	Count	Type	Full Name
1	MSE	12	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 2 (1, 24)

No.	Name	Count	Type	Full Name
1	MSE	24	Mod. Amino Acid	SELENOMETHIONINE

(no "Site" information available for 4IQE)

(no "SS Bond" information available for 4IQE)

Asymmetric Unit

No.	Residues
1	Leu A:125	-	Pro A:126
2	Leu B:125	-	Pro B:126

(no "SAP(SNP)/Variant" information available for 4IQE)

(no "PROSITE Motif" information available for 4IQE)

(no "Exon" information available for 4IQE)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:289
                                                                                                                                                                                                                                                                                                                                 
               SCOP domains d4iqea_ A: automated matches                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhh...eeee...hhhhhhhhhhhh...eeehhhhhhhhh........hhhhhhhhhhhhhhhhh..eeee......hhhhhhhhhhhhhhh...eeeee..............hhhhhhhhhhhhhhhh...eeeeeehhhhhhhhhhhhhhhhhhhh....eeee....hhhhhhhhhhhh....eee..........hhhhhhhh...eeee.hhhhhhhhhhhhhhhhhhhhhh....hhhhh.hhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4iqe A   4 VVNQSTQEELANRFRALVEANEILQIPGAHDAmAALVARNTGFLALYLSGAAYTASKGLPDLGIVTSTEVAERARDLVRATDLPVLVDIDTGFGGVLNVARTAVEmVEAKVAAVQIEDQQLPKKCNGKKLVTTEELVQKIKAIKEVAPSLYIVARTDARGVEGLDEAIERANAYVKAGADAIFPEALQSEEEFRLFNSKVNAPLLANmTEFGKTPYYSAEEFANmGFQmVIYPVTSLRVAAKAYENVFTLIKETGSQKDALSNmQTRSELYETISYHDFEELDTGIAKT 296
                              ||    14        24        34  |     44        54        64        74        84        94       104     | 114       124    || 137       147       157       167       177       187       197       207       217       227    |  237       247       257       267   |   277       287         
                              6|                           37-MSE                                                                  110-MSE            129|                                                                               215-MSE          232-MSE                                271-MSE                     
                               8                                                                                                                       133                                                                                                    236-MSE

Chain B from PDB  Type:PROTEIN  Length:288
                                                                                                                                                                                                                                                                                                                                
               SCOP domains d4iqeb_ B: automated matches                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhh...eeee...hhhhhhhhhhhh...eeehhhhhhhhh........hhhhhhhhhhhhhhhhh..eeee......hhhhhhhhhhhhhhh...eeeee...............hhhhhhhhhhhhhhhh...eeeeeehhhhhhhhhhhhhhhhhhhhhh..eeee....hhhhhhhhhhhh....eee..........hhhhhhhh...eeee.hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4iqe B   8 QSTQEELANRFRALVEANEILQIPGAHDAmAALVARNTGFLALYLSGAAYTASKGLPDLGIVTSTEVAERARDLVRATDLPVLVDIDTGFGGVLNVARTAVEmVEAKVAAVQIEDQQLPKKCGNGKKLVTTEELVQKIKAIKEVAPSLYIVARTDARGVEGLDEAIERANAYVKAGADAIFPEALQSEEEFRLFNSKVNAPLLANmTEFGKTPYYSAEEFANmGFQmVIYPVTSLRVAAKAYENVFTLIKETGSQKDALSNmQTRSELYETISYHDFEELDTGIAKTV 297
                                    17        27        37        47        57        67        77        87        97       107  |    117       127  ||   139       149       159       169       179       189       199       209     | 219       229  |   |239       249       259       269 |     279       289        
                                                        37-MSE                                                                  110-MSE             130|                                                                               215-MSE          232-MSE                                271-MSE                      
                                                                                                                                                     133                                                                                                    236-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: TIM beta/alpha-barrel (3956)

Superfamily: Phosphoenolpyruvate/pyruvate domain (92)

Family: automated matches (16)

Protein domain: automated matches (16)

Anthrax bacillus (Bacillus anthracis) [TaxId: 1392] (2)

1a	d4iqea_	A:
1b	d4iqeb_	B:

(no "CATH Domain" information available for 4IQE)

(no "Pfam Domain" information available for 4IQE)

Asymmetric Unit(hide GO term definitions)

Asymmetric Unit
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	Ligands, Modified Residues, Ions
		MSE	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
(no "Sites" information available for 4iqe)

	Cis Peptide Bonds
		Leu A:125 - Pro A:126	[ RasMol ]
		Leu B:125 - Pro B:126	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

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	4iqe
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		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
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		Interatomic Contacts of Structural Units	:	CSU
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	Q81QR8_BACAN \| Q81QR8	:	4iqd

4iqd	THE SAME PROTEIN WITH PYRUVATE RELATED ID: IDP02080 RELATED DB: TARGETTRACK

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 12)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

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SCOP Domains (1, 2)

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Pfam Domains (0, 0)

Gene Ontology (8, 8)

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