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(-) Description

Title :  CRYSTAL STRUCTURE OF CARBOXYVINYL-CARBOXYPHOSPHONATE PHOSPHORYLMUTASE FROM BACILLUS ANTHRACIS
 
Authors :  Y. Kim, N. Maltseva, K. Kwon, W. F. Anderson, A. Joachimiak, Center For Structural Genomics Of Infectious Diseases (Csgid)
Date :  11 Jan 13  (Deposition) - 23 Jan 13  (Release) - 03 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  A,B  (2x)
Keywords :  Structural Genomics, Niaid, National Institute Of Allergy And Infectious Diseases, Center For Structural Genomics Of Infectious Diseases, Csgid, Alpha-Beta Structure, Tim-Barrel, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Kim, N. Maltseva, K. Kwon, W. F. Anderson, A. Joachimiak, Center For Structural Genomics Of Infectious Diseases (Csgid)
Crystal Structure Of Carboxyvinyl-Carboxyphosphonate Phosphorylmutase From Bacillus Anthracis
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CARBOXYVINYL-CARBOXYPHOSPHONATE PHOSPHORYLMUTASE
    Chains: A, B
    EC Number: 4.1.3.30
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21 MAGIC
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Gene: PRPB, YQIQ
    Organism Common: ANTHRAX,ANTHRAX BACTERIUM
    Organism Scientific: BACILLUS ANTHRACIS
    Organism Taxid: 1392
    Strain: AMES ANCESTOR
    Synonym: METHYLISOCITRATE LYASE

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): AB
Biological Unit 2 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 17)

Asymmetric Unit (2, 17)
No.NameCountTypeFull Name
1MSE12Mod. Amino AcidSELENOMETHIONINE
2PYR5Ligand/IonPYRUVIC ACID
Biological Unit 1 (2, 17)
No.NameCountTypeFull Name
1MSE12Mod. Amino AcidSELENOMETHIONINE
2PYR5Ligand/IonPYRUVIC ACID
Biological Unit 2 (2, 34)
No.NameCountTypeFull Name
1MSE24Mod. Amino AcidSELENOMETHIONINE
2PYR10Ligand/IonPYRUVIC ACID

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:51 , SER A:53 , ALA A:55 , ASP A:92 , ARG A:162 , PRO A:240 , VAL A:241 , HOH A:515BINDING SITE FOR RESIDUE PYR A 401
2AC2SOFTWAREGLY A:170 , LEU A:171 , HOH A:607 , HOH A:671 , ARG B:166 , LEU B:171 , GLU B:199 , HOH B:589BINDING SITE FOR RESIDUE PYR A 402
3AC3SOFTWARETYR A:223 , TYR A:224 , GLU A:228 , LYS A:265 , HOH A:675 , GLU B:228BINDING SITE FOR RESIDUE PYR A 403
4AC4SOFTWAREGLU A:76 , ARG A:77 , ASP A:80 , HOH A:506 , HOH A:594 , GLU B:76 , ARG B:77 , HOH B:501BINDING SITE FOR RESIDUE PYR A 404
5AC5SOFTWARETYR B:51 , SER B:53 , ALA B:55 , ASP B:92 , ARG B:162 , ILE B:238 , PRO B:240 , HOH B:506 , HOH B:560BINDING SITE FOR RESIDUE PYR B 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4IQD)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Leu A:125 -Pro A:126
2Leu B:125 -Pro B:126

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4IQD)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4IQD)

(-) Exons   (0, 0)

(no "Exon" information available for 4IQD)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:290
                                                                                                                                                                                                                                                                                                                                  
               SCOP domains d4iqda_ A: automated matches                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhh...eeee...hhhhhhhhhhhh...eeehhhhhhhhh........hhhhhhhhhhhhhhhhh..eeee......hhhhhhhhhhhhhhh...eeeee.................hhhhhhhhhhhhhhhh...eeeeee......hhhhhhhhhhhhhhhh..eeee....hhhhhhhhhhhh....eee..........hhhhhhhh...eeee.hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4iqd A   6 NKQSTQEELANRFRALVEANEILQIPGAHDAmAALVARNTGFLALYLSGAAYTASKGLPDLGIVTSTEVAERARDLVRATDLPVLVDIDTGFGGVLNVARTAVEmVEAKVAAVQIEDQQLPKKCGHLNGKKLVTTEELVQKIKAIKEVAPSLYIVARTDARGVEGLDEAIERANAYVKAGADAIFPEALQSEEEFRLFNSKVNAPLLANmTEFGKTPYYSAEEFANmGFQmVIYPVTSLRVAAKAYENVFTLIKETGSQKDALSNmQTRSELYETISYHDFEELDTGIAK 295
                                    15        25        35 |      45        55        65        75        85        95       105    |  115       125       135       145       155       165       175       185       195       205       215       225      |235|      245       255       265     | 275       285       295
                                                          37-MSE                                                                  110-MSE                                                                                                  215-MSE          232-MSE                                271-MSE                    
                                                                                                                                                                                                                                                                236-MSE                                                       


Chain B from PDB  Type:PROTEIN  Length:289
                                                                                                                                                                                                                                                                                                                                 
               SCOP domains d4iqdb_ B: automated matches                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhh...eeee...hhhhhhhhhhhh...eeehhhhhhhhh........hhhhhhhhhhhhhhhhh..eeee......hhhhhhhhhhhhhhh...eeeee.................hhhhhhhhhhhhhhhh...eeeeeehhhhhhhhhhhhhhhhhhhhhh..eeee....hhhhhhhhhhhh....eee..........hhhhhhhh...eeee.hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4iqd B   8 QSTQEELANRFRALVEANEILQIPGAHDAmAALVARNTGFLALYLSGAAYTASKGLPDLGIVTSTEVAERARDLVRATDLPVLVDIDTGFGGVLNVARTAVEmVEAKVAAVQIEDQQLPKKCGHLNGKKLVTTEELVQKIKAIKEVAPSLYIVARTDARGVEGLDEAIERANAYVKAGADAIFPEALQSEEEFRLFNSKVNAPLLANmTEFGKTPYYSAEEFANmGFQmVIYPVTSLRVAAKAYENVFTLIKETGSQKDALSNmQTRSELYETISYHDFEELDTGIAKT 296
                                    17        27        37        47        57        67        77        87        97       107  |    117       127       137       147       157       167       177       187       197       207       217       227    |  237       247       257       267   |   277       287         
                                                        37-MSE                                                                  110-MSE                                                                                                  215-MSE          232-MSE                                271-MSE                     
                                                                                                                                                                                                                                                              236-MSE
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4IQD)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4IQD)

(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)

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