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(-) Description

Title :  THE CRYSTAL STRUCTURE OF A SHORT-CHAIN DEHYDROGENASES/REDUCTASE (ETHYLATED) FROM VEILLONELLA PARVULA DSM 2008
 
Authors :  K. Tan, C. Hatzos-Skintges, S. Clancy, A. Joachimiak, Midwest Center Structural Genomics (Mcsg)
Date :  10 Jan 13  (Deposition) - 06 Feb 13  (Release) - 06 Feb 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.55
Chains :  Asym./Biol. Unit :  A
Keywords :  Structural Genomics, Psi-Biology, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Lyase, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Tan, C. Hatzos-Skintges, S. Clancy, A. Joachimiak
The Crystal Structure Of A Short-Chain Dehydrogenases/Reductase (Ethylated) From Veillonella Parvula Dsm 2008
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - NAD-DEPENDENT EPIMERASE/DEHYDRATASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21(DE3)MAGIC
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: VPAR_0111
    Organism Scientific: VEILLONELLA PARVULA
    Organism Taxid: 479436
    Strain: DSM 2008
    Synonym: SHORT-CHAIN DEHYDROGENASES/REDUCTASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (7, 15)

Asymmetric/Biological Unit (7, 15)
No.NameCountTypeFull Name
1CL2Ligand/IonCHLORIDE ION
2ELY3Mod. Amino AcidN~6~,N~6~-DIETHYL-L-LYSINE
3FMT2Ligand/IonFORMIC ACID
4GOL1Ligand/IonGLYCEROL
5MSE5Mod. Amino AcidSELENOMETHIONINE
6PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
7PG41Ligand/IonTETRAETHYLENE GLYCOL

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREMSE A:105 , ALA A:106 , PHE A:112 , LEU A:151 , THR A:152 , PG4 A:307 , HOH A:411 , HOH A:414 , HOH A:466BINDING SITE FOR RESIDUE GOL A 301
2AC2SOFTWAREGLN A:13 , ILE A:14 , ARG A:179BINDING SITE FOR RESIDUE CL A 302
3AC3SOFTWAREGLY A:9 , ALA A:10 , ALA A:11 , HOH A:430BINDING SITE FOR RESIDUE CL A 303
4AC4SOFTWAREGLY A:62 , GLN A:66 , HIS A:211BINDING SITE FOR RESIDUE PEG A 304
5AC5SOFTWAREARG A:94 , ARG A:140 , TYR A:146 , GLU A:168 , SER A:202BINDING SITE FOR RESIDUE FMT A 305
6AC6SOFTWAREELY A:38BINDING SITE FOR RESIDUE FMT A 306
7AC7SOFTWAREASN A:123 , LEU A:124 , GOL A:301BINDING SITE FOR RESIDUE PG4 A 307

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4IPT)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4IPT)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4IPT)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4IPT)

(-) Exons   (0, 0)

(no "Exon" information available for 4IPT)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:218
                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee...hhhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhh...eeeee....hhhhhhhhhh...eeee....hhhhhhhhhhhhhhh...eeeeeee.......hhhhhhhhhhh.hhhhhhhhhhhhhhhhhh..eeeeeee.eee........eee.........eeehhhhhhhhhhhhh...hhhhh.eeeeee............ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ipt A   1 mYKYITILGAAGQIAQkLTATLLTYTDmHITLYGRQLkTRIPPEIIDHERVTVIEGSFQNPGKLEQAVTNAEVVFVGAmESGSDmASIVKALSRKNIRRVIGVSmAGLSGEFPVALEKWTFDNLPISYVQGERQARNVLRESNLNYTILRLTWLYNDPEKTDYELIPEGAQFNDAQVSREAVVkAIFDILHAADETPFHRTSIGVGEPGTHYDKPSFH 218
                            |       10      | 20       |30       |40        50        60        70        80    |   90       100    |  110       120       130       140       150       160       170       180   |   190       200       210        
                            |              17-ELY     28-MSE    38-ELY                                   79-MSE |                 105-MSE                                                                        184-ELY                              
                            1-MSE                                                                              85-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4IPT)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4IPT)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4IPT)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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UniProtKB/TrEMBL
        D1BQI7_VEIPT | D1BQI7: 3r6d 4hng 4hnh

(-) Related Entries Specified in the PDB File

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