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(-) Description

Title :  CRYSTAL STRUCTURE OF NAD-DEPENDENT EPIMERASE/DEHYDRATASE FROM VEILLONELLA PARVULA DSM 2008 WITH CZ-METHYLATED LYSINE
 
Authors :  C. Chang, C. Hatzos-Skintges, S. Clancy, A. Joachimiak, Midwest Cent Structural Genomics (Mcsg)
Date :  21 Mar 11  (Deposition) - 20 Apr 11  (Release) - 20 Apr 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.25
Chains :  Asym./Biol. Unit :  A
Keywords :  Structural Genomics, Psi-Biology, Midwest Center For Structural Genomics, Mcsg, Nad-Dependent Epimerase/Dehydratase, Veillonella Parvula, Reductive Methylation, Lyase, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  C. Chang, C. Hatzos-Skintges, S. Clancy, A. Joachimiak
Crystal Structure Of Nad-Dependent Epimerase/Dehydratase From Veillonella Parvula Dsm 2008 With Cz-Methylated Lysine
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - NAD-DEPENDENT EPIMERASE/DEHYDRATASE
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System StrainBL21(DE3)MAGIC
    Expression System Taxid469008
    Expression System Vector TypePMCSG7
    GeneVPAR_0111
    Organism ScientificVEILLONELLA PARVULA DSM 2008
    Organism Taxid479436
    StrainATCC 10790 / DSM 2008 / JCM 12972 / TE3

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 11)

Asymmetric/Biological Unit (2, 11)
No.NameCountTypeFull Name
1MLZ6Mod. Amino AcidN-METHYL-LYSINE
2MSE5Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 3R6D)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3R6D)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3R6D)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3R6D)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3R6D)

(-) Exons   (0, 0)

(no "Exon" information available for 3R6D)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:221
 aligned with D1BQI7_VEIPT | D1BQI7 from UniProtKB/TrEMBL  Length:218

    Alignment length:221
                               1                                                                                                                                                                                                                         
                               |     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217 
         D1BQI7_VEIPT     - ---MYKYITILGAAGQIAQKLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGKLEQAVTNAEVVFVGAMESGSDMASIVKALSRKNIRRVIGVSMAGLSGEFPVALEKWTFDNLPISYVQGERQARNVLRESNLNYTILRLTWLYNDPEKTDYELIPEGAQFNDAQVSREAVVKAIFDILHAADETPFHRTSIGVGEPGTHYDKPSFH 218
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------NAD_binding_10-3r6dA01 A:5-192                                                                                                                                                              -------------------------- Pfam domains
         Sec.struct. author ......eeeee...hhhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhh...eeeee....hhhhhhhhhh...eeee....hhhhhhhhhhhhhhh...eeeeeee.......hhhhhhhhhhh.hhhhhhhhhhhhhhhhhh..eeeeeee.eee........eee.........eeehhhhhhhhhhhhh...hhhhh.eeeeee............ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3r6d A  -2 SNAmYkYITILGAAGQIAQkLTATLLTYTDmHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGkLEQAVTNAEVVFVGAmESGSDmASIVKALSRkNIRRVIGVSmAGLSGEFPVALEKWTFDNLPISYVQGERQARNVLRESNLNYTILRLTWLYNDPEkTDYELIPEGAQFNDAQVSREAVVKAIFDILHAADETPFHRTSIGVGEPGTHYDkPSFH 218
                               | |   7        17        27|       37        47        57     |  67        77 |     |87       |97       107       117       127       137       147       157  |    167       177       187       197       207      |217 
                               | |            17-MLZ     28-MSE                             63-MLZ          79-MSE |        95-MLZ   105-MSE                                                160-MLZ                                               214-MLZ
                               1-MSE                                                                              85-MSE                                                                                                                                 
                                 3-MLZ                                                                                                                                                                                                                   

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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3R6D)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3R6D)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (D1BQI7_VEIPT | D1BQI7)
molecular function
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.

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 Related Entries

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UniProtKB/TrEMBL
        D1BQI7_VEIPT | D1BQI74hng 4hnh 4ipt

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