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(-) Description

Title :  CRYSTAL STRUCTURE OF OSH3 ORD IN COMPLEX WITH PI(4)P FROM SACCHAROMYCES CEREVISIAE
 
Authors :  J. Tong, Y. J. Im
Date :  05 Jan 13  (Deposition) - 31 Jul 13  (Release) - 31 Jul 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym./Biol. Unit :  A
Keywords :  Beta Barrel, Lipid Transport, Pi(4)P, Lipid Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Tong, H. Yang, H. Yang, S. H. Eom, Y. J. Im
Structure Of Osh3 Reveals A Conserved Mode Of Phosphoinositide Binding In Oxysterol-Binding Proteins
Structure V. 21 1203 2013
PubMed-ID: 23791945  |  Reference-DOI: 10.1016/J.STR.2013.05.007

(-) Compounds

Molecule 1 - OXYSTEROL-BINDING PROTEIN HOMOLOG 3
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: MODIFED PGEX4T
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: ORD (OSBP RELATED DOMAIN), UNP RESIDUES 605-996
    Gene: OSH3, YHR073W
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1PIF1Ligand/Ion(2R)-3-{[(S)-HYDROXY{[(1R,2R,3R,4R,5S,6R)-2,3,5,6-TETRAHYDROXY-4-(PHOSPHONOOXY)CYCLOHEXYL]OXY}PHOSPHORYL]OXY}PROPANE-1,2-DIYLDIOCTANOATE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:655 , SER A:656 , SER A:657 , ILE A:658 , ALA A:659 , MET A:660 , LYS A:717 , ASN A:720 , HIS A:745 , ARG A:746 , GLN A:769 , ASN A:780 , LYS A:941 , GLU A:945 , GLN A:948 , ARG A:949 , GLN A:994 , HOH A:1119 , HOH A:1136BINDING SITE FOR RESIDUE PIF A 1001

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4INQ)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Arg A:746 -Pro A:747

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4INQ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4INQ)

(-) Exons   (0, 0)

(no "Exon" information available for 4INQ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:372
                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .................hhhhhhhhh..........hhh.eeeeehhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhheee......eeeeeehhh.eeeeeeeee....eeeeeeee..eeeeeeeeeeeee....eeeeee..eeeee.....eeee....eeee.......eeee..eeeeee....eeeeee...........eeeeeee.........eeeeee...eeee....eeeee......hhhhh...hhhhhhh..............hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh........eeeee..eeee.....hhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4inq A 625 KSVTRRNDIPEAAASPPSLLSFLRKNVGKDLSSIAMPVTSNEPISILQLISETFEYAPLLTKATQRPDPITFVSAFAISFLSIYRDKTRTLRKPFNPLLAETFELIREDMGFRLISEKVSHRPPVFAFFAEHLDWECSYTVTPSQKFWGKSIELNNEGILRLKFKTTGELFEWTQPTTILKNLIAGERYMEPVNEFEVHSSKGDKSHILFDKAGMFSGRSEGFKVSIIPPPSSNRKKETLAGKWTQSLANETTHETIWEVGDLVSNPKKKYGFTKFTANLNEITEIEKGNLPPTDSRLRPDIRAYEEGNVDKAEEWKLKLEQLQRERRNKGQDVEPKYFEKVSKNEWKYITGPKSYWERRKKHDWSDISQLW 996
                                   634       644       654       664       674       684       694       704       714       724       734       744       754       764       774       784       794       804       814       824       834       844       854       864       874       884       894       904       914       924       934       944       954       964       974       984       994
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4INQ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4INQ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4INQ)

(-) Gene Ontology  (21, 21)

Asymmetric/Biological Unit(hide GO term definitions)

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  OSH3_YEAST | P38713
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        OSH3_YEAST | P38713: 4iap 4ic4

(-) Related Entries Specified in the PDB File

4iap CRYSTAL STRUCTURE OF OSH3 PH DOMAIN FROM SACCHAROMYCES CEREVISIAE
4ic4 CRYSTAL STRUCTURE OF APO OSH3 ORD FROM SACCHAROMYCES CEREVISIAE