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(-) Description

Title :  CRYSTAL STRUCTURE OF OSH3 ORD FROM SACCHAROMYCES CEREVISIAE
 
Authors :  J. Tong, Y. J. Im
Date :  09 Dec 12  (Deposition) - 31 Jul 13  (Release) - 31 Jul 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym./Biol. Unit :  A
Keywords :  Beta Barrel, Lipid Transport, Pi(4)P Binding, Lipid Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Tong, H. Yang, H. Yang, S. H. Eom, Y. J. Im
Structure Of Osh3 Reveals A Conserved Mode Of Phosphoinositide Binding In Oxysterol-Binding Proteins
Structure V. 21 1203 2013
PubMed-ID: 23791945  |  Reference-DOI: 10.1016/J.STR.2013.05.007

(-) Compounds

Molecule 1 - OXYSTEROL-BINDING PROTEIN HOMOLOG 3
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: MODIFED PGEX4T
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: ORD (OSBP RELATED DOMAIN), UNP RESIDUES 605-996
    Gene: OSH3, YHR073W
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4IC4)

(-) Sites  (0, 0)

(no "Site" information available for 4IC4)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4IC4)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Arg A:746 -Pro A:747

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4IC4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4IC4)

(-) Exons   (0, 0)

(no "Exon" information available for 4IC4)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:372
                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .................hhhhhhhhh...hhhhh..hhh.eeeeehhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhheee......eeeeeehhh.eeeeeeeee....eeeeeeee..eeeeeeeeeeeee....eeeeee.eeeeee.....eeeee...eeee.......eeee..eeeeee....eeeeee...........eeeeeee.........eeeeee...eeee.....eeee......hhhhh...hhhhhhhh.............hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh........eeeee..eeee.....hhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4ic4 A 625 KSVTRRNDIPEAAASPPSLLSFLRKNVGKDLSSIAMPVTSNEPISILQLISETFEYAPLLTKATQRPDPITFVSAFAISFLSIYRDKTRTLRKPFNPLLAETFELIREDMGFRLISEKVSHRPPVFAFFAEHLDWECSYTVTPSQKFWGKSIELNNEGILRLKFKTTGELFEWTQPTTILKNLIAGERYMEPVNEFEVHSSKGDKSHILFDKAGMFSGRSEGFKVSIIPPPSSNRKKETLAGKWTQSLANETTHETIWEVGDLVSNPKKKYGFTKFTANLNEITEIEKGNLPPTDSRLRPDIRAYEEGNVDKAEEWKLKLEQLQRERRNKGQDVEPKYFEKVSKNEWKYITGPKSYWERRKKHDWSDISQLW 996
                                   634       644       654       664       674       684       694       704       714       724       734       744       754       764       774       784       794       804       814       824       834       844       854       864       874       884       894       904       914       924       934       944       954       964       974       984       994
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4IC4)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4IC4)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4IC4)

(-) Gene Ontology  (21, 21)

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  Cis Peptide Bonds
    Arg A:746 - Pro A:747   [ RasMol ]  
 

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  OSH3_YEAST | P38713
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        OSH3_YEAST | P38713: 4iap 4inq

(-) Related Entries Specified in the PDB File

4iap CRYSTAL STRUCTURE OF OSH3 PH DOMAIN IN FUSION WITH T4 LYSOZYME