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(-) Description

Title :  CRYSTAL STRUCTURE OF A TRNA (GUANINE-N1)-METHYLTRANSFERASE FROM ANAPLASMA PHAGOCYTOPHILUM BOUND TO S-ADENOSYLHOMOCYSTEINE
 
Authors :  Seattle Structural Genomics Center For Infectious Disease (S
Date :  16 Dec 12  (Deposition) - 26 Dec 12  (Release) - 26 Dec 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Structural Genomics, Niaid, National Institute Of Allergy And Infectious Diseases, Seattle Structural Genomics Center For Infectious Disease, Ssgcid, Trna Modification, S-Adenosyl Methionine-Dependent, Sam, Sah, S-Adenosyl Homocysteine, Natural Inhibitor, Trna, M1G, G37, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. E. Edwards, M. C. Clifton, Seattle Structural Genomics Center For Infectious Disease (Ssgcid)
Crystal Structure Of A Trna (Guanine-N1)-Methyltransferase From Anaplasma Phagocytophilum Bound To S-Adenosylhomocysteine
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - TRNA (GUANINE-N(1)-)-METHYLTRANSFERASE
    Chains: A
    EC Number: 2.1.1.228
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PAVA0421
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: APH_1267, TRMD
    Organism Scientific: ANAPLASMA PHAGOCYTOPHILUM
    Organism Taxid: 212042
    Strain: HZ
    Synonym: M1G-METHYLTRANSFERASE, TRNA [GM37] METHYLTRANSFERASE

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric Unit (2, 3)
No.NameCountTypeFull Name
1CL2Ligand/IonCHLORIDE ION
2SAH1Ligand/IonS-ADENOSYL-L-HOMOCYSTEINE
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2SAH2Ligand/IonS-ADENOSYL-L-HOMOCYSTEINE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:86 , SER A:87 , PRO A:88 , GLY A:112 , PHE A:114 , GLU A:115 , GLY A:116 , VAL A:130 , SER A:131 , ILE A:132 , GLY A:133 , TYR A:135 , LEU A:137 , GLY A:139 , GLY A:140 , ALA A:143 , GLN A:167 , GLU A:175 , HOH A:407 , HOH A:460 , HOH A:506 , HOH A:507 , HOH A:516 , HOH A:519BINDING SITE FOR RESIDUE SAH A 301
2AC2SOFTWAREPHE A:9 , PRO A:10 , GLN A:11 , HOH A:470BINDING SITE FOR RESIDUE CL A 302
3AC3SOFTWAREHIS A:78 , ASN A:80 , THR A:81 , HOH A:491BINDING SITE FOR RESIDUE CL A 303

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4IG6)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Phe A:13 -Pro A:14
2Arg A:181 -Pro A:182

 Sequence-Structure Mapping

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(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4IG6)

(-) Exons   (0, 0)

(no "Exon" information available for 4IG6)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:223
                                                                                                                                                                                                                                                               
               SCOP domains d4ig6a_ A: automated matches                                                                                                                                                                                                    SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.hhhhhhhhhhhhhhhhhhhhh..eeeeee.hhhh.......ee.........eehhhhhhhhhhhhhhhh...eeeee....ee.hhhhhhhhhh..eeeee.......hhhhhhhh..eeee........hhhhhhhhhhhhhh......hhhhhhhhhhhh............ee..ee.hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ig6 A   0 SMIFNVLTIFPQMFPGPLGVSNLGSALKKGLWTLNVFDIRAFANNKHNTVDDTPYGGGPGMLLRADVLGRCIDEVLSLHPNTKLMFTSPRGVSFTQDIARQTMNFDNITLLCGRFEGIDERVVDFYKLQEVSIGDYVLSGGELAAMVIIDTCVRMVPGVIGNAESLKQESMEGSLEYPQYTRPASWKGMEVPEVLLTGNHGEIEKWRRNASLSITAARRPDLL 222
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219
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 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4IG6)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4IG6)

(-) Gene Ontology  (9, 9)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

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        TRMD_ANAPZ | Q2GIL5: 3knu

(-) Related Entries Specified in the PDB File

3knu CRYSTAL STRUCTURE OF TRNA (GUANINE-N1)-METHYLTRANSFERASE FROM ANAPLASMA PHAGOCYTOPHILUM RELATED ID: SSGCID-ANPHA.00316.A RELATED DB: TARGETTRACK