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(-) Description

Title :  STRUCTURE OF RSL MUTANT W76A IN COMPLEX WITH L-FUCOSE
 
Authors :  A. Audfray, J. Arnaud, A. Varrot, A. Imberty
Date :  30 Nov 12  (Deposition) - 31 Jul 13  (Release) - 09 Oct 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.54
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Lectin, Beta-Propeller, L-Fucose, Multivalency, Trivalent Fucose Binding Lectin, Fucosylated Oligosaccharides Binding, Soluble, Sugar Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Arnaud, J. Claudinon, K. Trondle, M. Trovaslet, G. Larson, A. Thomas, A. Varrot, W. Romer, A. Imberty, A. Audfray
Reduction Of Lectin Valency Drastically Changes Glycolipid Dynamics In Membranes But Not Surface Avidity
Acs Chem. Biol. V. 8 1918 2013
PubMed-ID: 23855446  |  Reference-DOI: 10.1021/CB400254B

(-) Compounds

Molecule 1 - PUTATIVE FUCOSE-BINDING LECTIN PROTEIN
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET25
    Expression System Strain: TUNER
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: CMR15_11270, RSC2107
    Mutation: YES
    Organism Scientific: RALSTONIA SOLANACEARUM
    Organism Taxid: 305
    Strain: ATCC 11696

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 12)

Asymmetric/Biological Unit (4, 12)
No.NameCountTypeFull Name
1EDO1Ligand/Ion1,2-ETHANEDIOL
2FUC5Ligand/IonALPHA-L-FUCOSE
3FUL4Ligand/IonBETA-L-FUCOSE
4PG42Ligand/IonTETRAETHYLENE GLYCOL

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:17 , GLU A:28 , TYR A:37 , GLY A:39 , ALA A:40 , PHE A:41 , TRP A:81 , HOH A:239BINDING SITE FOR RESIDUE FUC A 101
02AC2SOFTWAREARG A:62 , GLU A:73 , GLY A:84 , ALA A:85 , TYR A:86 , HOH A:238 , HOH A:265 , TRP B:31 , TRP B:36 , LYS B:83 , HOH B:284BINDING SITE FOR RESIDUE FUC A 102
03AC3SOFTWAREARG A:62 , GLU A:73 , GLY A:84 , ALA A:85 , TYR A:86 , HOH A:238 , HOH A:265 , HOH A:269 , TRP B:31 , TRP B:36 , HOH B:284BINDING SITE FOR RESIDUE FUL A 103
04AC4SOFTWAREARG B:17 , GLU B:28 , TYR B:37 , GLY B:39 , ALA B:40 , PHE B:41 , TRP B:81 , PG4 B:105 , HOH B:250 , HOH B:280BINDING SITE FOR RESIDUE FUC B 101
05AC5SOFTWAREARG B:62 , GLU B:73 , GLY B:84 , ALA B:85 , TYR B:86 , HOH B:216 , HOH B:270 , HOH B:284 , TRP C:31 , TRP C:36BINDING SITE FOR RESIDUE FUC B 102
06AC6SOFTWAREARG B:62 , GLU B:73 , GLY B:84 , ALA B:85 , TYR B:86 , HOH B:216 , HOH B:270 , HOH B:271 , HOH B:284 , TRP C:31 , TRP C:36BINDING SITE FOR RESIDUE FUL B 103
07AC7SOFTWAREILE B:59 , ALA B:76 , ASP B:77 , GLY B:78 , ASN B:79 , GLY B:80BINDING SITE FOR RESIDUE EDO B 104
08AC8SOFTWARETHR B:38 , ALA B:40 , FUC B:101 , HOH B:250 , HOH B:281BINDING SITE FOR RESIDUE PG4 B 105
09AC9SOFTWARETRP A:31 , TRP A:36 , ARG C:62 , GLU C:73 , GLY C:84 , ALA C:85 , TYR C:86 , HOH C:227 , HOH C:248BINDING SITE FOR RESIDUE FUC C 101
10BC1SOFTWARETRP A:31 , TRP A:36 , ARG C:62 , GLU C:73 , GLY C:84 , ALA C:85 , TYR C:86 , HOH C:227 , HOH C:248 , HOH C:251BINDING SITE FOR RESIDUE FUL C 102
11BC2SOFTWAREASP C:32 , ASN C:79 , GLY C:80 , TRP C:81 , FUL C:104 , HOH C:249BINDING SITE FOR RESIDUE PG4 C 103
12BC3SOFTWAREARG C:17 , GLU C:28 , TYR C:37 , GLY C:39 , ALA C:40 , TRP C:81 , PG4 C:103BINDING SITE FOR RESIDUE FUL C 104

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4I6S)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Val A:13 -Pro A:14
2Val B:13 -Pro B:14
3Val C:13 -Pro C:14

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4I6S)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4I6S)

(-) Exons   (0, 0)

(no "Exon" information available for 4I6S)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:88
                                                                                                                       
               SCOP domains ---------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee....eeeeeeee..eeeeeee....eeeeeeeee..eeeeeeeee..eeeeeeeeee..eeeeeee....eee...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------- Transcript
                  4i6s A  2 SVQTAATSWGTVPSIRVYTANNGKITERCWDGKGWYTGAFNEPGDNVSVTSWLVGSAIHIRVYASTGTTTTEWCADGNGWTKGAYTAT 89
                                    11        21        31        41        51        61        71        81        


Chain B from PDB  Type:PROTEIN  Length:90
                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeee....eeeeeeee..eeeeeee....eeeeeeeee..eeeeeeeee..eeeeeeeeee..eeeeeee....eee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------ Transcript
                  4i6s B  1 SSVQTAATSWGTVPSIRVYTANNGKITERCWDGKGWYTGAFNEPGDNVSVTSWLVGSAIHIRVYASTGTTTTEWCADGNGWTKGAYTATN 90
                                    10        20        30        40        50        60        70        80        90


Chain C from PDB  Type:PROTEIN  Length:88
                                                                                                                       
               SCOP domains ---------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee....eeeeeeee..eeeeeee....eeeeeeeee..eeeeeeeee..eeeeeeeeee..eeeeeeeee..eee...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------- Transcript
                  4i6s C  2 SVQTAATSWGTVPSIRVYTANNGKITERCWDGKGWYTGAFNEPGDNVSVTSWLVGSAIHIRVYASTGTTTTEWCADGNGWTKGAYTAT 89
                                    11        21        31        41        51        61        71        81
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4I6S)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4I6S)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4I6S)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        D8NA05_RALSL | D8NA05: 2bs5 5ajb 5ajc
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        D8NA05_RALSL | D8NA05: 3zi8

(-) Related Entries Specified in the PDB File

2bt9 RALSTONIA SOLANACEARUM FUCOSE BINDING LECTIN