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(-) Description

Title :  BEL BETA-TREFOIL APO CRYSTAL FORM 4
 
Authors :  M. Bovi, L. Cenci, M. Perduca, S. Capaldi, M. E. Carrizo, L. Civiero, L. R. Chiarelli, M. Galliano, H. L. Monaco
Date :  28 Nov 12  (Deposition) - 24 Apr 13  (Release) - 24 Apr 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.77
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  A  (1x)
Biol. Unit 4:  B  (1x)
Biol. Unit 5:  C  (1x)
Biol. Unit 6:  D  (1x)
Keywords :  Lectin, Fruiting Bodies, Sugar Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Bovi, L. Cenci, M. Perduca, S. Capaldi, M. E. Carrizo, L. Civiero, L. R. Chiarelli, M. Galliano, H. L. Monaco
Bel {Beta}-Trefoil: A Novel Lectin With Antineoplastic Properties In King Bolete (Boletus Edulis) Mushrooms.
Glycobiology V. 23 578 2013
PubMed-ID: 23213111  |  Reference-DOI: 10.1093/GLYCOB/CWS164

(-) Compounds

Molecule 1 - BEL-BETA TREFOIL
    Chains: A, B, C, D
    Organism Common: KING BOLETE MUSHROOM
    Organism Scientific: BOLETUS EDULIS
    Organism Taxid: 36056

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD
Biological Unit 3 (1x): A   
Biological Unit 4 (1x):  B  
Biological Unit 5 (1x):   C 
Biological Unit 6 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 6)

Asymmetric Unit (1, 6)
No.NameCountTypeFull Name
1TRS6Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Biological Unit 1 (1, 4)
No.NameCountTypeFull Name
1TRS4Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1TRS2Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Biological Unit 3 (1, 2)
No.NameCountTypeFull Name
1TRS2Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Biological Unit 4 (1, 2)
No.NameCountTypeFull Name
1TRS2Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Biological Unit 5 (1, 1)
No.NameCountTypeFull Name
1TRS1Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Biological Unit 6 (1, 1)
No.NameCountTypeFull Name
1TRS1Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:25 , ARG A:27 , TYR A:37 , TYR A:42 , ASP A:44 , GLN A:45 , TRS B:202 , HOH B:336BINDING SITE FOR RESIDUE TRS A 201
2AC2SOFTWAREPHE A:72 , ARG A:74 , TYR A:90 , ASP A:92 , ASN A:93 , HOH A:411BINDING SITE FOR RESIDUE TRS A 202
3AC3SOFTWARETYR B:119 , ARG B:121 , PHE B:131 , ASP B:138 , GLN B:139BINDING SITE FOR RESIDUE TRS B 201
4AC4SOFTWAREASN A:30 , TRS A:201 , HOH A:393 , TYR B:25 , ARG B:27 , TYR B:37 , TYR B:42 , ASP B:44 , GLN B:45BINDING SITE FOR RESIDUE TRS B 202
5AC5SOFTWARETYR C:25 , ARG C:27 , TYR C:37 , TYR C:42 , ASP C:44 , GLN C:45 , TRS D:201 , HOH D:384BINDING SITE FOR RESIDUE TRS C 201
6AC6SOFTWARETRS C:201 , TYR D:25 , ARG D:27 , TYR D:37 , TYR D:42 , ASP D:44 , GLN D:45BINDING SITE FOR RESIDUE TRS D 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4I4R)

(-) Cis Peptide Bonds  (12, 12)

Asymmetric Unit
No.Residues
1Pro A:31 -Pro A:32
2Ser A:78 -Pro A:79
3Asp A:125 -Pro A:126
4Pro B:31 -Pro B:32
5Ser B:78 -Pro B:79
6Asp B:125 -Pro B:126
7Pro C:31 -Pro C:32
8Ser C:78 -Pro C:79
9Asp C:125 -Pro C:126
10Pro D:31 -Pro D:32
11Ser D:78 -Pro D:79
12Asp D:125 -Pro D:126

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4I4R)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4I4R)

(-) Exons   (0, 0)

(no "Exon" information available for 4I4R)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:146
                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eeeee.....eeee.......eeee....hhhh.eeeee.hhhhh..eeeee.....eeee.......eeee.....hhhh.eeeee.......eeeee....eeeee.......eeee....hhhh.eeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4i4r A   1 VNFPNIPAEGVQFRLRARDTGYVIYSRTENPPLVWQYNGPPYDDQLFTLIYGTGPRKNLYAIKSVPNGRVLFSRTSASPYVGNIAGDGTYNDNWFQFIQDDNDPNSFRIYNLASDTVLYSRTTADPKFGNFTGAKYDDQLWHFELV 146
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140      


Chain B from PDB  Type:PROTEIN  Length:146
                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eeeee.....eeee.......eeee....hhhh.eeeee.hhhhh..eeeee.....eeee.......eeee.....hhhh.eeeee.......eeeee....eeeee.......eeee....hhhh.eeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4i4r B   1 VNFPNIPAEGVQFRLRARDTGYVIYSRTENPPLVWQYNGPPYDDQLFTLIYGTGPRKNLYAIKSVPNGRVLFSRTSASPYVGNIAGDGTYNDNWFQFIQDDNDPNSFRIYNLASDTVLYSRTTADPKFGNFTGAKYDDQLWHFELV 146
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140      


Chain C from PDB  Type:PROTEIN  Length:146
                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eeeee.....eeee.......eeee....hhhh.eeeee.hhhhh..eeeee.....eeee.......eeee.....hhhh.eeeee.......eeeee....eeeee.......eeee....hhhh.eeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4i4r C   1 VNFPNIPAEGVQFRLRARDTGYVIYSRTENPPLVWQYNGPPYDDQLFTLIYGTGPRKNLYAIKSVPNGRVLFSRTSASPYVGNIAGDGTYNDNWFQFIQDDNDPNSFRIYNLASDTVLYSRTTADPKFGNFTGAKYDDQLWHFELV 146
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140      


Chain D from PDB  Type:PROTEIN  Length:146
                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eeeee.....eeee.......eeee....hhhh.eeeee.hhhhh..eeeee.....eeee.......eeee.....hhhh.eeeee.......eeeee....eeeee.......eeee....hhhh.eeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4i4r D   1 VNFPNIPAEGVQFRLRARDTGYVIYSRTENPPLVWQYNGPPYDDQLFTLIYGTGPRKNLYAIKSVPNGRVLFSRTSASPYVGNIAGDGTYNDNWFQFIQDDNDPNSFRIYNLASDTVLYSRTTADPKFGNFTGAKYDDQLWHFELV 146
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4I4R)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4I4R)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4I4R)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4I4R)

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        R4GRU5_BOLED | R4GRU5: 4i4o 4i4p 4i4u 4i4v 4i4y

(-) Related Entries Specified in the PDB File

4i4o 4i4p 4i4q 4i4s 4i4u 4i4v 4i4x 4i4y