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(-) Description

Title :  BEL BETA-TREFOIL APO CRYSTAL FORM 1
 
Authors :  M. Bovi, L. Cenci, M. Perduca, S. Capaldi, M. E. Carrizo, L. Civiero, L. R. Chiarelli, M. Galliano, H. L. Monaco
Date :  28 Nov 12  (Deposition) - 24 Apr 13  (Release) - 24 Apr 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.12
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  A  (1x)
Biol. Unit 3:  B  (1x)
Keywords :  Lectin, Galactose, Fruiting Bodies, Sugar Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Bovi, L. Cenci, M. Perduca, S. Capaldi, M. E. Carrizo, L. Civiero, L. R. Chiarelli, M. Galliano, H. L. Monaco
Bel {Beta}-Trefoil: A Novel Lectin With Antineoplastic Properties In King Bolete (Boletus Edulis) Mushrooms.
Glycobiology V. 23 578 2013
PubMed-ID: 23213111  |  Reference-DOI: 10.1093/GLYCOB/CWS164

(-) Compounds

Molecule 1 - BEL BETA-TREFOIL
    Chains: A, B
    Organism Common: KING BOLETE MUSHROOM
    Organism Scientific: BOLETUS EDULIS
    Organism Taxid: 36056

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): AB
Biological Unit 2 (1x): A 
Biological Unit 3 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 11)

Asymmetric Unit (2, 11)
No.NameCountTypeFull Name
1GOL10Ligand/IonGLYCEROL
2SO41Ligand/IonSULFATE ION
Biological Unit 1 (2, 11)
No.NameCountTypeFull Name
1GOL10Ligand/IonGLYCEROL
2SO41Ligand/IonSULFATE ION
Biological Unit 2 (2, 6)
No.NameCountTypeFull Name
1GOL5Ligand/IonGLYCEROL
2SO41Ligand/IonSULFATE ION
Biological Unit 3 (1, 5)
No.NameCountTypeFull Name
1GOL5Ligand/IonGLYCEROL
2SO4-1Ligand/IonSULFATE ION

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:121 , PHE A:131 , TYR A:136 , ASP A:138 , GLN A:139BINDING SITE FOR RESIDUE GOL A 201
02AC2SOFTWAREPHE A:72 , ARG A:74 , TYR A:90 , ASP A:92 , ASN A:93 , ASN A:105 , HOH A:398 , HOH A:441BINDING SITE FOR RESIDUE GOL A 202
03AC3SOFTWARETYR A:25 , ARG A:27 , TYR A:37 , ASP A:44 , GLN A:45 , HOH A:400 , HOH A:415BINDING SITE FOR RESIDUE GOL A 203
04AC4SOFTWAREHOH A:351 , HOH A:456BINDING SITE FOR RESIDUE GOL A 204
05AC5SOFTWAREARG A:108 , TYR A:110 , LYS A:135 , HOH A:316 , HOH A:319 , HOH A:327 , HOH A:342 , VAL B:1BINDING SITE FOR RESIDUE GOL A 205
06AC6SOFTWAREARG A:27 , THR A:28 , GLU A:29 , HOH A:332 , HOH A:459BINDING SITE FOR RESIDUE SO4 A 206
07AC7SOFTWAREGLU B:9 , GLY B:10 , TYR B:119 , ARG B:121 , PHE B:131 , ASP B:138 , GLN B:139 , HOH B:368 , HOH B:413BINDING SITE FOR RESIDUE GOL B 201
08AC8SOFTWARETYR B:25 , ARG B:27 , TYR B:37 , TYR B:42 , ASP B:44 , GLN B:45 , HOH B:350 , HOH B:426 , HOH B:468BINDING SITE FOR RESIDUE GOL B 202
09AC9SOFTWAREPHE B:72 , ARG B:74 , TYR B:90 , ASP B:92 , ASN B:93 , HOH B:451BINDING SITE FOR RESIDUE GOL B 203
10BC1SOFTWAREASP A:100 , ASP A:101 , ASN A:102 , ASP A:103 , PRO A:104 , HOH A:445 , LYS B:57 , HOH B:361BINDING SITE FOR RESIDUE GOL B 204
11BC2SOFTWAREVAL A:1 , ARG B:108 , TYR B:110 , VAL B:117 , GLY B:133 , LYS B:135 , HOH B:312 , HOH B:335 , HOH B:343 , HOH B:443 , HOH B:448BINDING SITE FOR RESIDUE GOL B 205

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4I4O)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Pro A:31 -Pro A:32
2Ser A:78 -Pro A:79
3Asp A:125 -Pro A:126
4Pro B:31 -Pro B:32
5Ser B:78 -Pro B:79
6Asp B:125 -Pro B:126

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4I4O)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4I4O)

(-) Exons   (0, 0)

(no "Exon" information available for 4I4O)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:146
                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eeeee.....eeee.......eeee....hhhh.eeeee.hhhhh..eeeee.....eeee.......eeee.....hhhh.eeeee.......eeeee....eeeee.......eeee....hhhh.eeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4i4o A   1 VNFPNIPAEGVQFRLRARDTGYVIYSRTENPPLVWQYNGPPYDDQLFTLIYGTGPRKNLYAIKSVPNGRVLFSRTSASPYVGNIAGDGTYNDNWFQFIQDDNDPNSFRIYNLASDTVLYSRTTADPKFGNFTGAKYDDQLWHFELV 146
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140      


Chain B from PDB  Type:PROTEIN  Length:146
                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eeeee.....eeee.......eeee....hhhh.eeeee.hhhhh..eeeee.....eeee.......eeee.....hhhh.eeeee.......eeeee....eeeee.......eeee....hhhh.eeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4i4o B   1 VNFPNIPAEGVQFRLRARDTGYVIYSRTENPPLVWQYNGPPYDDQLFTLIYGTGPRKNLYAIKSVPNGRVLFSRTSASPYVGNIAGDGTYNDNWFQFIQDDNDPNSFRIYNLASDTVLYSRTTADPKFGNFTGAKYDDQLWHFELV 146
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4I4O)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4I4O)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4I4O)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4I4O)

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(-) Related Entries Specified in the PDB File

4i4p 4i4q 4i4r 4i4s 4i4u 4i4v 4i4x 4i4y