Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)

(-) Description

Title :  THE CRYSTAL STRUCTURE OF AN ABC TRANSPORTER SUBSTRATE-BINDING PROTEIN FROM BRADYRHIZOBIUM JAPONICUM USDA 110
 
Authors :  Y. Fan, K. Tan, J. Mack, S. Zerbs, F. Collart, A. Joachimiak, Midwest Ce Structural Genomics (Mcsg)
Date :  20 Nov 12  (Deposition) - 05 Dec 12  (Release) - 25 Sep 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B,C,D  (2x)
Keywords :  Structural Genomics, Psi-Biology, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  K. Tan, C. Chang, M. Cuff, J. Osipiuk, E. Landorf, J. C. Mack, S. Zerbs, A. Joachimiak, F. R. Collart
Structural And Functional Characterization Of Solute Bindin Proteins For Aromatic Compounds Derived From Lignin: P-Coumaric Acid And Related Aromatic Acids.
Proteins V. 81 1709 2013
PubMed-ID: 23606130  |  Reference-DOI: 10.1002/PROT.24305

(-) Compounds

Molecule 1 - ABC TRANSPORTER SUBSTRATE-BINDING PROTEIN
    ChainsA, B, C, D
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPMCSG7
    Expression System StrainBL21(DE3)MAGIC
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    GeneBLL6825
    Organism ScientificBRADYRHIZOBIUM JAPONICUM
    Organism Taxid224911
    StrainUSDA 110

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit ABCD
Biological Unit 1 (2x)ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 96)

Asymmetric Unit (5, 96)
No.NameCountTypeFull Name
1ACT19Ligand/IonACETATE ION
2GOL15Ligand/IonGLYCEROL
3MLT4Ligand/IonD-MALATE
4MSE24Mod. Amino AcidSELENOMETHIONINE
5SO434Ligand/IonSULFATE ION
Biological Unit 1 (5, 192)
No.NameCountTypeFull Name
1ACT38Ligand/IonACETATE ION
2GOL30Ligand/IonGLYCEROL
3MLT8Ligand/IonD-MALATE
4MSE48Mod. Amino AcidSELENOMETHIONINE
5SO468Ligand/IonSULFATE ION

(-) Sites  (72, 72)

Asymmetric Unit (72, 72)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREPRO A:218 , THR A:221 , HOH A:508 , TRP C:345BINDING SITE FOR RESIDUE SO4 A 401
02AC2SOFTWAREPRO A:131 , GLU A:132BINDING SITE FOR RESIDUE SO4 A 402
03AC3SOFTWAREGLY A:195 , ARG A:208BINDING SITE FOR RESIDUE SO4 A 403
04AC4SOFTWAREMSE A:341 , SER A:342 , TYR A:343 , ALA A:344BINDING SITE FOR RESIDUE SO4 A 404
05AC5SOFTWARELYS A:87 , ARG A:109 , GLN A:113 , ACT A:412BINDING SITE FOR RESIDUE SO4 A 405
06AC6SOFTWARESER A:250 , LYS A:254 , ILE A:305 , ASP A:306 , ARG A:324BINDING SITE FOR RESIDUE SO4 A 406
07AC7SOFTWAREASN A:162 , THR A:262 , LYS A:337BINDING SITE FOR RESIDUE SO4 A 407
08AC8SOFTWARELYS A:87BINDING SITE FOR RESIDUE SO4 A 408
09AC9SOFTWAREARG A:176BINDING SITE FOR RESIDUE SO4 A 409
10BC1SOFTWARETYR A:106 , TYR A:145 , ARG A:180 , HIS A:182 , HOH A:502BINDING SITE FOR RESIDUE GOL A 410
11BC2SOFTWARETYR A:307BINDING SITE FOR RESIDUE ACT A 411
12BC3SOFTWARETRP A:83 , LYS A:87 , ARG A:109 , GLN A:113 , SO4 A:405BINDING SITE FOR RESIDUE ACT A 412
13BC4SOFTWAREGLY A:105 , TYR A:106 , ARG A:109 , TYR A:343BINDING SITE FOR RESIDUE ACT A 413
14BC5SOFTWARESER A:152 , ASN A:235BINDING SITE FOR RESIDUE ACT A 414
15BC6SOFTWAREPHE A:210 , ARG A:357BINDING SITE FOR RESIDUE ACT A 415
16BC7SOFTWAREPHE A:261BINDING SITE FOR RESIDUE ACT A 416
17BC8SOFTWARETHR A:225 , GLY A:227 , TRP A:245 , ARG A:248BINDING SITE FOR RESIDUE MLT A 417
18BC9SOFTWARESER B:250 , LYS B:254 , ASP B:306 , ARG B:324 , HOH B:520BINDING SITE FOR RESIDUE SO4 B 401
19CC1SOFTWARETYR B:145 , ARG B:180 , HOH B:508BINDING SITE FOR RESIDUE SO4 B 402
20CC2SOFTWAREARG B:208BINDING SITE FOR RESIDUE SO4 B 403
21CC3SOFTWAREARG B:176BINDING SITE FOR RESIDUE SO4 B 404
22CC4SOFTWAREPHE B:210 , ARG B:357BINDING SITE FOR RESIDUE SO4 B 405
23CC5SOFTWARETRP B:83 , LYS B:87 , ARG B:109 , GLN B:113BINDING SITE FOR RESIDUE SO4 B 406
24CC6SOFTWAREGLU B:132 , ARG B:135BINDING SITE FOR RESIDUE SO4 B 407
25CC7SOFTWAREASN B:162 , THR B:262 , TYR B:263 , LYS B:337 , ACT B:414BINDING SITE FOR RESIDUE GOL B 408
26CC8SOFTWAREMSE B:341 , SER B:342 , TYR B:343 , ALA B:344BINDING SITE FOR RESIDUE GOL B 409
27CC9SOFTWAREGLN B:50 , THR B:271 , TYR B:307 , HOH B:559BINDING SITE FOR RESIDUE GOL B 410
28DC1SOFTWARESER B:152 , LYS B:154 , ASN B:235 , LYS B:258 , ACT B:415 , HOH B:501BINDING SITE FOR RESIDUE GOL B 411
29DC2SOFTWAREALA B:279 , PRO B:280 , LEU B:282 , GLU B:283BINDING SITE FOR RESIDUE GOL B 412
30DC3SOFTWAREALA B:85 , THR B:88 , HOH B:554BINDING SITE FOR RESIDUE ACT B 413
31DC4SOFTWAREPHE B:261 , GOL B:408BINDING SITE FOR RESIDUE ACT B 414
32DC5SOFTWAREASN B:235 , GOL B:411BINDING SITE FOR RESIDUE ACT B 415
33DC6SOFTWARETHR B:225 , SER B:226 , GLY B:227 , ALA B:228 , TRP B:245 , ARG B:248BINDING SITE FOR RESIDUE MLT B 416
34DC7SOFTWAREPRO C:103 , TYR C:145 , ARG C:180 , ILE C:184BINDING SITE FOR RESIDUE SO4 C 401
35DC8SOFTWARETRP C:83 , LYS C:87 , ARG C:109 , GLN C:113 , SO4 C:407 , HOH C:560BINDING SITE FOR RESIDUE SO4 C 402
36DC9SOFTWARESER C:250 , LYS C:254 , ILE C:305 , ASP C:306 , ARG C:324 , SO4 C:409BINDING SITE FOR RESIDUE SO4 C 403
37EC1SOFTWAREGLN A:363 , PHE C:210 , GLU C:214 , ARG C:357 , PHE C:361BINDING SITE FOR RESIDUE SO4 C 404
38EC2SOFTWAREARG C:208BINDING SITE FOR RESIDUE SO4 C 405
39EC3SOFTWAREALA A:85 , THR A:88 , GLN C:229 , HOH C:552BINDING SITE FOR RESIDUE SO4 C 406
40EC4SOFTWAREARG C:109 , PRO C:349 , SO4 C:402BINDING SITE FOR RESIDUE SO4 C 407
41EC5SOFTWAREASP C:159BINDING SITE FOR RESIDUE SO4 C 408
42EC6SOFTWARELYS C:254 , ARG C:324 , SO4 C:403BINDING SITE FOR RESIDUE SO4 C 409
43EC7SOFTWARETHR C:262 , TYR C:263 , LYS C:337 , ACT C:419BINDING SITE FOR RESIDUE GOL C 410
44EC8SOFTWAREHIS C:219 , LYS D:211BINDING SITE FOR RESIDUE GOL C 411
45EC9SOFTWAREMSE C:341 , SER C:342 , TYR C:343 , ALA C:344BINDING SITE FOR RESIDUE GOL C 412
46FC1SOFTWARETYR C:54 , GLU C:143 , TYR C:307 , MLT C:422BINDING SITE FOR RESIDUE GOL C 413
47FC2SOFTWARETYR C:134 , ALA C:335BINDING SITE FOR RESIDUE GOL C 414
48FC3SOFTWAREGLN A:50 , SER A:78 , GLN C:50 , ILE C:79 , PRO C:80BINDING SITE FOR RESIDUE ACT C 415
49FC4SOFTWARETYR C:106 , GLU C:352 , GLU C:355 , HOH C:560BINDING SITE FOR RESIDUE ACT C 416
50FC5SOFTWAREVAL C:90 , GLN C:113BINDING SITE FOR RESIDUE ACT C 417
51FC6SOFTWAREGLY C:105 , TYR C:106BINDING SITE FOR RESIDUE ACT C 418
52FC7SOFTWAREPHE C:261 , GOL C:410BINDING SITE FOR RESIDUE ACT C 419
53FC8SOFTWARETYR C:151 , GLN C:153 , SER C:260BINDING SITE FOR RESIDUE ACT C 420
54FC9SOFTWAREPRO C:280 , LEU C:282 , GLU C:283BINDING SITE FOR RESIDUE ACT C 421
55GC1SOFTWARESER C:226 , GLY C:227 , ALA C:228 , ARG C:248 , GOL C:413BINDING SITE FOR RESIDUE MLT C 422
56GC2SOFTWARETHR B:221 , TRP D:345BINDING SITE FOR RESIDUE SO4 D 401
57GC3SOFTWAREPRO D:103 , TYR D:145 , ARG D:180 , ILE D:184 , GOL D:413BINDING SITE FOR RESIDUE SO4 D 402
58GC4SOFTWARETRP D:83 , LYS D:87 , ARG D:109 , GLN D:113BINDING SITE FOR RESIDUE SO4 D 403
59GC5SOFTWAREARG D:208BINDING SITE FOR RESIDUE SO4 D 404
60GC6SOFTWAREPRO D:131 , GLU D:132 , HOH D:550BINDING SITE FOR RESIDUE SO4 D 405
61GC7SOFTWARESER D:250 , LYS D:254 , ILE D:305 , ASP D:306 , ARG D:324 , HOH D:538BINDING SITE FOR RESIDUE SO4 D 406
62GC8SOFTWAREMSE D:341 , SER D:342 , TYR D:343 , ALA D:344BINDING SITE FOR RESIDUE SO4 D 407
63GC9SOFTWAREPHE D:210 , GLU D:214 , ARG D:357 , PHE D:361BINDING SITE FOR RESIDUE SO4 D 408
64HC1SOFTWARELYS C:211 , HIS D:219BINDING SITE FOR RESIDUE SO4 D 409
65HC2SOFTWAREASN D:162 , THR D:262 , TYR D:263 , LYS D:337 , ACT D:415BINDING SITE FOR RESIDUE GOL D 410
66HC3SOFTWAREGLN D:50 , GLU D:143 , TYR D:145 , TRP D:245 , TYR D:307BINDING SITE FOR RESIDUE GOL D 411
67HC4SOFTWAREALA D:133 , TYR D:134 , SER D:141 , SER D:270 , HOH D:572BINDING SITE FOR RESIDUE GOL D 412
68HC5SOFTWAREPRO D:103 , GLY D:105 , TYR D:106 , ILE D:184 , TYR D:343 , SO4 D:402 , HOH D:503BINDING SITE FOR RESIDUE GOL D 413
69HC6SOFTWARELYS D:154 , LYS D:258BINDING SITE FOR RESIDUE ACT D 414
70HC7SOFTWAREPHE D:261 , GLN D:327 , GOL D:410BINDING SITE FOR RESIDUE ACT D 415
71HC8SOFTWARESER B:78 , GLN D:50 , SER D:78 , ILE D:79 , PRO D:80BINDING SITE FOR RESIDUE ACT D 416
72HC9SOFTWARETHR D:225 , SER D:226 , GLY D:227 , ALA D:228 , ARG D:248BINDING SITE FOR RESIDUE MLT D 417

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4I1D)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Tyr A:202 -Pro A:203
2Tyr B:202 -Pro B:203
3Tyr C:202 -Pro C:203
4Tyr D:202 -Pro D:203

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4I1D)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4I1D)

(-) Exons   (0, 0)

(no "Exon" information available for 4I1D)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:322
                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhh...........hhhhhhhhhh......hhhhhhhhhh.hhhhh...........................hhhhhhh...............hhhhhhhhhh..hhhhh...hhhhhhhhhhhhhhhh.....hhhhhhhhhhh.........hhhhhhhhhh.........................hhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhh...hhhhhh....hhhhhh.....hhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4i1d A  42 NAQITFVSQGGAYQAAQTVAILDPSAKKLGITINQDSIPDAWPAIKTQVGSGKPIWDVVDTPTGYCLRGGEQGLIEKLDFSKIPNAAAmPEAYRSPYSVSYEFYSSVLAYSQKTFPKDAPNSWVDFWDVKKFPGRRALRNHPIATLEAALmADGVAPDKLYPLDVDRAFKKLEEIKPHITVWWTSGAQSAQLLNDGEVDmEmAWNGRVSAVAKEGAKVSFTYNQGILQSTSLCILKGAPNLETAVKFLNEAVDPVHQANLPLHIDYGPGNPKAFETNVIKPERAAQLPSEPANAAKQALmSYAWWSSPAGEAAEKRWASFmQ 363
                                    51        61        71        81        91       101       111       121       131       141       151       161       171       181       191|      201       211       221       231       241 |     251       261       271       281       291       301       311       321       331       341       351       361| 
                                                                                                                  130-MSE                                                       192-MSE                                          241-MSE                                                                                             341-MSE              362-MSE
                                                                                                                                                                                                                                   243-MSE                                                                                                                    

Chain B from PDB  Type:PROTEIN  Length:322
                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhh...........hhhhhhhhhh......hhhhhhhhhh.hhhhh...........................hhhhhhh...............hhhhhhhhhh..hhhhh...hhhhhhhhhhhhh........hhhhhhhhhhh.........hhhhhhhhhh.........................hhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhh...hhhhhh....hhhhhhh....hhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4i1d B  42 NAQITFVSQGGAYQAAQTVAILDPSAKKLGITINQDSIPDAWPAIKTQVGSGKPIWDVVDTPTGYCLRGGEQGLIEKLDFSKIPNAAAmPEAYRSPYSVSYEFYSSVLAYSQKTFPKDAPNSWVDFWDVKKFPGRRALRNHPIATLEAALmADGVAPDKLYPLDVDRAFKKLEEIKPHITVWWTSGAQSAQLLNDGEVDmEmAWNGRVSAVAKEGAKVSFTYNQGILQSTSLCILKGAPNLETAVKFLNEAVDPVHQANLPLHIDYGPGNPKAFETNVIKPERAAQLPSEPANAAKQALmSYAWWSSPAGEAAEKRWASFmQ 363
                                    51        61        71        81        91       101       111       121       131       141       151       161       171       181       191|      201       211       221       231       241 |     251       261       271       281       291       301       311       321       331       341       351       361| 
                                                                                                                  130-MSE                                                       192-MSE                                          241-MSE                                                                                             341-MSE              362-MSE
                                                                                                                                                                                                                                   243-MSE                                                                                                                    

Chain C from PDB  Type:PROTEIN  Length:322
                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhh..........hhhhhhhhhh......hhhhhhhhhh.hhh.............................hhhhhh................hhhhhhhhhh..hhhhh...hhhhhhhhhhhhh........hhhhhhhhhhh.........hhhhhhhhhhh........................hhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhh...hhhhhh....hhhhhh.....hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4i1d C  43 AQITFVSQGGAYQAAQTVAILDPSAKKLGITINQDSIPDAWPAIKTQVGSGKPIWDVVDTPTGYCLRGGEQGLIEKLDFSKIPNAAAmPEAYRSPYSVSYEFYSSVLAYSQKTFPKDAPNSWVDFWDVKKFPGRRALRNHPIATLEAALmADGVAPDKLYPLDVDRAFKKLEEIKPHITVWWTSGAQSAQLLNDGEVDmEmAWNGRVSAVAKEGAKVSFTYNQGILQSTSLCILKGAPNLETAVKFLNEAVDPVHQANLPLHIDYGPGNPKAFETNVIKPERAAQLPSEPANAAKQALmSYAWWSSPAGEAAEKRWASFmQK 364
                                    52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242|      252       262       272       282       292       302       312       322       332       342       352       362  
                                                                                                                 130-MSE                                                       192-MSE                                          241-MSE                                                                                             341-MSE              362-MSE
                                                                                                                                                                                                                                  243-MSE                                                                                                                     

Chain D from PDB  Type:PROTEIN  Length:322
                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhh..........hhhhhhhhhh......hhhhhhhhhh.hhh.............................hhhhhhh...............hhhhhhhhhh..........hhhhhhhhhhhhh........hhhhhhhhhhh.........hhhhhhhhhhh........................hhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhh...hhhhhh....hhhhhhh....hhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4i1d D  42 NAQITFVSQGGAYQAAQTVAILDPSAKKLGITINQDSIPDAWPAIKTQVGSGKPIWDVVDTPTGYCLRGGEQGLIEKLDFSKIPNAAAmPEAYRSPYSVSYEFYSSVLAYSQKTFPKDAPNSWVDFWDVKKFPGRRALRNHPIATLEAALmADGVAPDKLYPLDVDRAFKKLEEIKPHITVWWTSGAQSAQLLNDGEVDmEmAWNGRVSAVAKEGAKVSFTYNQGILQSTSLCILKGAPNLETAVKFLNEAVDPVHQANLPLHIDYGPGNPKAFETNVIKPERAAQLPSEPANAAKQALmSYAWWSSPAGEAAEKRWASFmQ 363
                                    51        61        71        81        91       101       111       121       131       141       151       161       171       181       191|      201       211       221       231       241 |     251       261       271       281       291       301       311       321       331       341       351       361| 
                                                                                                                  130-MSE                                                       192-MSE                                          241-MSE                                                                                             341-MSE              362-MSE
                                                                                                                                                                                                                                   243-MSE                                                                                                                    

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4I1D)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4I1D)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4I1D)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4I1D)

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    ACT  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    GOL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MLT  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MSE  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    SO4  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
    BC8  [ RasMol ]  +environment [ RasMol ]
    BC9  [ RasMol ]  +environment [ RasMol ]
    CC1  [ RasMol ]  +environment [ RasMol ]
    CC2  [ RasMol ]  +environment [ RasMol ]
    CC3  [ RasMol ]  +environment [ RasMol ]
    CC4  [ RasMol ]  +environment [ RasMol ]
    CC5  [ RasMol ]  +environment [ RasMol ]
    CC6  [ RasMol ]  +environment [ RasMol ]
    CC7  [ RasMol ]  +environment [ RasMol ]
    CC8  [ RasMol ]  +environment [ RasMol ]
    CC9  [ RasMol ]  +environment [ RasMol ]
    DC1  [ RasMol ]  +environment [ RasMol ]
    DC2  [ RasMol ]  +environment [ RasMol ]
    DC3  [ RasMol ]  +environment [ RasMol ]
    DC4  [ RasMol ]  +environment [ RasMol ]
    DC5  [ RasMol ]  +environment [ RasMol ]
    DC6  [ RasMol ]  +environment [ RasMol ]
    DC7  [ RasMol ]  +environment [ RasMol ]
    DC8  [ RasMol ]  +environment [ RasMol ]
    DC9  [ RasMol ]  +environment [ RasMol ]
    EC1  [ RasMol ]  +environment [ RasMol ]
    EC2  [ RasMol ]  +environment [ RasMol ]
    EC3  [ RasMol ]  +environment [ RasMol ]
    EC4  [ RasMol ]  +environment [ RasMol ]
    EC5  [ RasMol ]  +environment [ RasMol ]
    EC6  [ RasMol ]  +environment [ RasMol ]
    EC7  [ RasMol ]  +environment [ RasMol ]
    EC8  [ RasMol ]  +environment [ RasMol ]
    EC9  [ RasMol ]  +environment [ RasMol ]
    FC1  [ RasMol ]  +environment [ RasMol ]
    FC2  [ RasMol ]  +environment [ RasMol ]
    FC3  [ RasMol ]  +environment [ RasMol ]
    FC4  [ RasMol ]  +environment [ RasMol ]
    FC5  [ RasMol ]  +environment [ RasMol ]
    FC6  [ RasMol ]  +environment [ RasMol ]
    FC7  [ RasMol ]  +environment [ RasMol ]
    FC8  [ RasMol ]  +environment [ RasMol ]
    FC9  [ RasMol ]  +environment [ RasMol ]
    GC1  [ RasMol ]  +environment [ RasMol ]
    GC2  [ RasMol ]  +environment [ RasMol ]
    GC3  [ RasMol ]  +environment [ RasMol ]
    GC4  [ RasMol ]  +environment [ RasMol ]
    GC5  [ RasMol ]  +environment [ RasMol ]
    GC6  [ RasMol ]  +environment [ RasMol ]
    GC7  [ RasMol ]  +environment [ RasMol ]
    GC8  [ RasMol ]  +environment [ RasMol ]
    GC9  [ RasMol ]  +environment [ RasMol ]
    HC1  [ RasMol ]  +environment [ RasMol ]
    HC2  [ RasMol ]  +environment [ RasMol ]
    HC3  [ RasMol ]  +environment [ RasMol ]
    HC4  [ RasMol ]  +environment [ RasMol ]
    HC5  [ RasMol ]  +environment [ RasMol ]
    HC6  [ RasMol ]  +environment [ RasMol ]
    HC7  [ RasMol ]  +environment [ RasMol ]
    HC8  [ RasMol ]  +environment [ RasMol ]
    HC9  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Tyr A:202 - Pro A:203   [ RasMol ]  
    Tyr B:202 - Pro B:203   [ RasMol ]  
    Tyr C:202 - Pro C:203   [ RasMol ]  
    Tyr D:202 - Pro D:203   [ RasMol ]  
 
Biological Unit
  Complete Structure
    Biological Unit 1  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  4i1d
    Family and Domain InformationProDom | SYSTERS
    General Structural InformationGlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in MembranesOPM
    Protein SurfaceSURFACE
    Secondary StructureDSSP (structure derived) | HSSP (homology derived)
    Structural GenomicsGeneCensus
    Structural NeighboursCE | VAST
    Structure ClassificationCATH | Dali | SCOP
    Validation and Original DataBMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  Q89F76_BRADU | Q89F76
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/TrEMBL
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease InformationOMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related InformationGenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain InformationXDom
    Interatomic Contacts of Structural UnitsCSU
    Ligand-protein ContactsLPC
    Protein CavitiescastP
    Sequence and Secondary StructurePDBCartoon
    Structure AlignmentSTRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence BrowserSTING
 
Access by UniProt ID/Accession number
  Q89F76_BRADU | Q89F76
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 4I1D)

(-) Related Entries Specified in the PDB File

4fcl THIS DEPOSIT IS TO REPLACE 4FCL. RELATED ID: MCSG-APC102202 RELATED DB: TARGETTRACK