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4I1D
Asym. Unit
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Asym.Unit (443 KB)
Biol.Unit 1 (854 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF AN ABC TRANSPORTER SUBSTRATE-BINDING PROTEIN FROM BRADYRHIZOBIUM JAPONICUM USDA 110
Authors
:
Y. Fan, K. Tan, J. Mack, S. Zerbs, F. Collart, A. Joachimiak, Midwest Ce Structural Genomics (Mcsg)
Date
:
20 Nov 12 (Deposition) - 05 Dec 12 (Release) - 25 Sep 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (2x)
Keywords
:
Structural Genomics, Psi-Biology, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Transport Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Tan, C. Chang, M. Cuff, J. Osipiuk, E. Landorf, J. C. Mack, S. Zerbs, A. Joachimiak, F. R. Collart
Structural And Functional Characterization Of Solute Bindin Proteins For Aromatic Compounds Derived From Lignin: P-Coumaric Acid And Related Aromatic Acids.
Proteins V. 81 1709 2013
[
close entry info
]
Hetero Components
(5, 96)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
1f: ACETATE ION (ACTf)
1g: ACETATE ION (ACTg)
1h: ACETATE ION (ACTh)
1i: ACETATE ION (ACTi)
1j: ACETATE ION (ACTj)
1k: ACETATE ION (ACTk)
1l: ACETATE ION (ACTl)
1m: ACETATE ION (ACTm)
1n: ACETATE ION (ACTn)
1o: ACETATE ION (ACTo)
1p: ACETATE ION (ACTp)
1q: ACETATE ION (ACTq)
1r: ACETATE ION (ACTr)
1s: ACETATE ION (ACTs)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
2j: GLYCEROL (GOLj)
2k: GLYCEROL (GOLk)
2l: GLYCEROL (GOLl)
2m: GLYCEROL (GOLm)
2n: GLYCEROL (GOLn)
2o: GLYCEROL (GOLo)
3a: D-MALATE (MLTa)
3b: D-MALATE (MLTb)
3c: D-MALATE (MLTc)
3d: D-MALATE (MLTd)
4a: SELENOMETHIONINE (MSEa)
4b: SELENOMETHIONINE (MSEb)
4c: SELENOMETHIONINE (MSEc)
4d: SELENOMETHIONINE (MSEd)
4e: SELENOMETHIONINE (MSEe)
4f: SELENOMETHIONINE (MSEf)
4g: SELENOMETHIONINE (MSEg)
4h: SELENOMETHIONINE (MSEh)
4i: SELENOMETHIONINE (MSEi)
4j: SELENOMETHIONINE (MSEj)
4k: SELENOMETHIONINE (MSEk)
4l: SELENOMETHIONINE (MSEl)
4m: SELENOMETHIONINE (MSEm)
4n: SELENOMETHIONINE (MSEn)
4o: SELENOMETHIONINE (MSEo)
4p: SELENOMETHIONINE (MSEp)
4q: SELENOMETHIONINE (MSEq)
4r: SELENOMETHIONINE (MSEr)
4s: SELENOMETHIONINE (MSEs)
4t: SELENOMETHIONINE (MSEt)
4u: SELENOMETHIONINE (MSEu)
4v: SELENOMETHIONINE (MSEv)
4w: SELENOMETHIONINE (MSEw)
4x: SELENOMETHIONINE (MSEx)
5a: SULFATE ION (SO4a)
5aa: SULFATE ION (SO4aa)
5ab: SULFATE ION (SO4ab)
5ac: SULFATE ION (SO4ac)
5ad: SULFATE ION (SO4ad)
5ae: SULFATE ION (SO4ae)
5af: SULFATE ION (SO4af)
5ag: SULFATE ION (SO4ag)
5ah: SULFATE ION (SO4ah)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
5e: SULFATE ION (SO4e)
5f: SULFATE ION (SO4f)
5g: SULFATE ION (SO4g)
5h: SULFATE ION (SO4h)
5i: SULFATE ION (SO4i)
5j: SULFATE ION (SO4j)
5k: SULFATE ION (SO4k)
5l: SULFATE ION (SO4l)
5m: SULFATE ION (SO4m)
5n: SULFATE ION (SO4n)
5o: SULFATE ION (SO4o)
5p: SULFATE ION (SO4p)
5q: SULFATE ION (SO4q)
5r: SULFATE ION (SO4r)
5s: SULFATE ION (SO4s)
5t: SULFATE ION (SO4t)
5u: SULFATE ION (SO4u)
5v: SULFATE ION (SO4v)
5w: SULFATE ION (SO4w)
5x: SULFATE ION (SO4x)
5y: SULFATE ION (SO4y)
5z: SULFATE ION (SO4z)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
19
Ligand/Ion
ACETATE ION
2
GOL
15
Ligand/Ion
GLYCEROL
3
MLT
4
Ligand/Ion
D-MALATE
4
MSE
24
Mod. Amino Acid
SELENOMETHIONINE
5
SO4
34
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(72, 72)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
55: GC1 (SOFTWARE)
56: GC2 (SOFTWARE)
57: GC3 (SOFTWARE)
58: GC4 (SOFTWARE)
59: GC5 (SOFTWARE)
60: GC6 (SOFTWARE)
61: GC7 (SOFTWARE)
62: GC8 (SOFTWARE)
63: GC9 (SOFTWARE)
64: HC1 (SOFTWARE)
65: HC2 (SOFTWARE)
66: HC3 (SOFTWARE)
67: HC4 (SOFTWARE)
68: HC5 (SOFTWARE)
69: HC6 (SOFTWARE)
70: HC7 (SOFTWARE)
71: HC8 (SOFTWARE)
72: HC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PRO A:218 , THR A:221 , HOH A:508 , TRP C:345
BINDING SITE FOR RESIDUE SO4 A 401
02
AC2
SOFTWARE
PRO A:131 , GLU A:132
BINDING SITE FOR RESIDUE SO4 A 402
03
AC3
SOFTWARE
GLY A:195 , ARG A:208
BINDING SITE FOR RESIDUE SO4 A 403
04
AC4
SOFTWARE
MSE A:341 , SER A:342 , TYR A:343 , ALA A:344
BINDING SITE FOR RESIDUE SO4 A 404
05
AC5
SOFTWARE
LYS A:87 , ARG A:109 , GLN A:113 , ACT A:412
BINDING SITE FOR RESIDUE SO4 A 405
06
AC6
SOFTWARE
SER A:250 , LYS A:254 , ILE A:305 , ASP A:306 , ARG A:324
BINDING SITE FOR RESIDUE SO4 A 406
07
AC7
SOFTWARE
ASN A:162 , THR A:262 , LYS A:337
BINDING SITE FOR RESIDUE SO4 A 407
08
AC8
SOFTWARE
LYS A:87
BINDING SITE FOR RESIDUE SO4 A 408
09
AC9
SOFTWARE
ARG A:176
BINDING SITE FOR RESIDUE SO4 A 409
10
BC1
SOFTWARE
TYR A:106 , TYR A:145 , ARG A:180 , HIS A:182 , HOH A:502
BINDING SITE FOR RESIDUE GOL A 410
11
BC2
SOFTWARE
TYR A:307
BINDING SITE FOR RESIDUE ACT A 411
12
BC3
SOFTWARE
TRP A:83 , LYS A:87 , ARG A:109 , GLN A:113 , SO4 A:405
BINDING SITE FOR RESIDUE ACT A 412
13
BC4
SOFTWARE
GLY A:105 , TYR A:106 , ARG A:109 , TYR A:343
BINDING SITE FOR RESIDUE ACT A 413
14
BC5
SOFTWARE
SER A:152 , ASN A:235
BINDING SITE FOR RESIDUE ACT A 414
15
BC6
SOFTWARE
PHE A:210 , ARG A:357
BINDING SITE FOR RESIDUE ACT A 415
16
BC7
SOFTWARE
PHE A:261
BINDING SITE FOR RESIDUE ACT A 416
17
BC8
SOFTWARE
THR A:225 , GLY A:227 , TRP A:245 , ARG A:248
BINDING SITE FOR RESIDUE MLT A 417
18
BC9
SOFTWARE
SER B:250 , LYS B:254 , ASP B:306 , ARG B:324 , HOH B:520
BINDING SITE FOR RESIDUE SO4 B 401
19
CC1
SOFTWARE
TYR B:145 , ARG B:180 , HOH B:508
BINDING SITE FOR RESIDUE SO4 B 402
20
CC2
SOFTWARE
ARG B:208
BINDING SITE FOR RESIDUE SO4 B 403
21
CC3
SOFTWARE
ARG B:176
BINDING SITE FOR RESIDUE SO4 B 404
22
CC4
SOFTWARE
PHE B:210 , ARG B:357
BINDING SITE FOR RESIDUE SO4 B 405
23
CC5
SOFTWARE
TRP B:83 , LYS B:87 , ARG B:109 , GLN B:113
BINDING SITE FOR RESIDUE SO4 B 406
24
CC6
SOFTWARE
GLU B:132 , ARG B:135
BINDING SITE FOR RESIDUE SO4 B 407
25
CC7
SOFTWARE
ASN B:162 , THR B:262 , TYR B:263 , LYS B:337 , ACT B:414
BINDING SITE FOR RESIDUE GOL B 408
26
CC8
SOFTWARE
MSE B:341 , SER B:342 , TYR B:343 , ALA B:344
BINDING SITE FOR RESIDUE GOL B 409
27
CC9
SOFTWARE
GLN B:50 , THR B:271 , TYR B:307 , HOH B:559
BINDING SITE FOR RESIDUE GOL B 410
28
DC1
SOFTWARE
SER B:152 , LYS B:154 , ASN B:235 , LYS B:258 , ACT B:415 , HOH B:501
BINDING SITE FOR RESIDUE GOL B 411
29
DC2
SOFTWARE
ALA B:279 , PRO B:280 , LEU B:282 , GLU B:283
BINDING SITE FOR RESIDUE GOL B 412
30
DC3
SOFTWARE
ALA B:85 , THR B:88 , HOH B:554
BINDING SITE FOR RESIDUE ACT B 413
31
DC4
SOFTWARE
PHE B:261 , GOL B:408
BINDING SITE FOR RESIDUE ACT B 414
32
DC5
SOFTWARE
ASN B:235 , GOL B:411
BINDING SITE FOR RESIDUE ACT B 415
33
DC6
SOFTWARE
THR B:225 , SER B:226 , GLY B:227 , ALA B:228 , TRP B:245 , ARG B:248
BINDING SITE FOR RESIDUE MLT B 416
34
DC7
SOFTWARE
PRO C:103 , TYR C:145 , ARG C:180 , ILE C:184
BINDING SITE FOR RESIDUE SO4 C 401
35
DC8
SOFTWARE
TRP C:83 , LYS C:87 , ARG C:109 , GLN C:113 , SO4 C:407 , HOH C:560
BINDING SITE FOR RESIDUE SO4 C 402
36
DC9
SOFTWARE
SER C:250 , LYS C:254 , ILE C:305 , ASP C:306 , ARG C:324 , SO4 C:409
BINDING SITE FOR RESIDUE SO4 C 403
37
EC1
SOFTWARE
GLN A:363 , PHE C:210 , GLU C:214 , ARG C:357 , PHE C:361
BINDING SITE FOR RESIDUE SO4 C 404
38
EC2
SOFTWARE
ARG C:208
BINDING SITE FOR RESIDUE SO4 C 405
39
EC3
SOFTWARE
ALA A:85 , THR A:88 , GLN C:229 , HOH C:552
BINDING SITE FOR RESIDUE SO4 C 406
40
EC4
SOFTWARE
ARG C:109 , PRO C:349 , SO4 C:402
BINDING SITE FOR RESIDUE SO4 C 407
41
EC5
SOFTWARE
ASP C:159
BINDING SITE FOR RESIDUE SO4 C 408
42
EC6
SOFTWARE
LYS C:254 , ARG C:324 , SO4 C:403
BINDING SITE FOR RESIDUE SO4 C 409
43
EC7
SOFTWARE
THR C:262 , TYR C:263 , LYS C:337 , ACT C:419
BINDING SITE FOR RESIDUE GOL C 410
44
EC8
SOFTWARE
HIS C:219 , LYS D:211
BINDING SITE FOR RESIDUE GOL C 411
45
EC9
SOFTWARE
MSE C:341 , SER C:342 , TYR C:343 , ALA C:344
BINDING SITE FOR RESIDUE GOL C 412
46
FC1
SOFTWARE
TYR C:54 , GLU C:143 , TYR C:307 , MLT C:422
BINDING SITE FOR RESIDUE GOL C 413
47
FC2
SOFTWARE
TYR C:134 , ALA C:335
BINDING SITE FOR RESIDUE GOL C 414
48
FC3
SOFTWARE
GLN A:50 , SER A:78 , GLN C:50 , ILE C:79 , PRO C:80
BINDING SITE FOR RESIDUE ACT C 415
49
FC4
SOFTWARE
TYR C:106 , GLU C:352 , GLU C:355 , HOH C:560
BINDING SITE FOR RESIDUE ACT C 416
50
FC5
SOFTWARE
VAL C:90 , GLN C:113
BINDING SITE FOR RESIDUE ACT C 417
51
FC6
SOFTWARE
GLY C:105 , TYR C:106
BINDING SITE FOR RESIDUE ACT C 418
52
FC7
SOFTWARE
PHE C:261 , GOL C:410
BINDING SITE FOR RESIDUE ACT C 419
53
FC8
SOFTWARE
TYR C:151 , GLN C:153 , SER C:260
BINDING SITE FOR RESIDUE ACT C 420
54
FC9
SOFTWARE
PRO C:280 , LEU C:282 , GLU C:283
BINDING SITE FOR RESIDUE ACT C 421
55
GC1
SOFTWARE
SER C:226 , GLY C:227 , ALA C:228 , ARG C:248 , GOL C:413
BINDING SITE FOR RESIDUE MLT C 422
56
GC2
SOFTWARE
THR B:221 , TRP D:345
BINDING SITE FOR RESIDUE SO4 D 401
57
GC3
SOFTWARE
PRO D:103 , TYR D:145 , ARG D:180 , ILE D:184 , GOL D:413
BINDING SITE FOR RESIDUE SO4 D 402
58
GC4
SOFTWARE
TRP D:83 , LYS D:87 , ARG D:109 , GLN D:113
BINDING SITE FOR RESIDUE SO4 D 403
59
GC5
SOFTWARE
ARG D:208
BINDING SITE FOR RESIDUE SO4 D 404
60
GC6
SOFTWARE
PRO D:131 , GLU D:132 , HOH D:550
BINDING SITE FOR RESIDUE SO4 D 405
61
GC7
SOFTWARE
SER D:250 , LYS D:254 , ILE D:305 , ASP D:306 , ARG D:324 , HOH D:538
BINDING SITE FOR RESIDUE SO4 D 406
62
GC8
SOFTWARE
MSE D:341 , SER D:342 , TYR D:343 , ALA D:344
BINDING SITE FOR RESIDUE SO4 D 407
63
GC9
SOFTWARE
PHE D:210 , GLU D:214 , ARG D:357 , PHE D:361
BINDING SITE FOR RESIDUE SO4 D 408
64
HC1
SOFTWARE
LYS C:211 , HIS D:219
BINDING SITE FOR RESIDUE SO4 D 409
65
HC2
SOFTWARE
ASN D:162 , THR D:262 , TYR D:263 , LYS D:337 , ACT D:415
BINDING SITE FOR RESIDUE GOL D 410
66
HC3
SOFTWARE
GLN D:50 , GLU D:143 , TYR D:145 , TRP D:245 , TYR D:307
BINDING SITE FOR RESIDUE GOL D 411
67
HC4
SOFTWARE
ALA D:133 , TYR D:134 , SER D:141 , SER D:270 , HOH D:572
BINDING SITE FOR RESIDUE GOL D 412
68
HC5
SOFTWARE
PRO D:103 , GLY D:105 , TYR D:106 , ILE D:184 , TYR D:343 , SO4 D:402 , HOH D:503
BINDING SITE FOR RESIDUE GOL D 413
69
HC6
SOFTWARE
LYS D:154 , LYS D:258
BINDING SITE FOR RESIDUE ACT D 414
70
HC7
SOFTWARE
PHE D:261 , GLN D:327 , GOL D:410
BINDING SITE FOR RESIDUE ACT D 415
71
HC8
SOFTWARE
SER B:78 , GLN D:50 , SER D:78 , ILE D:79 , PRO D:80
BINDING SITE FOR RESIDUE ACT D 416
72
HC9
SOFTWARE
THR D:225 , SER D:226 , GLY D:227 , ALA D:228 , ARG D:248
BINDING SITE FOR RESIDUE MLT D 417
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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Exons
(0, 0)
Info
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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CATH Domains
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