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(-) Description

Title :  STRUCTURE OF A PRESENILIN FAMILY INTRAMEMBRANE ASPARTATE PROTEASE IN C2221 SPACE GROUP
 
Authors :  X. Li, S. Dang, C. Yan, J. Wang, Y. Shi
Date :  13 Nov 12  (Deposition) - 19 Dec 12  (Release) - 02 Jan 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.80
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Protease, Membrane Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  X. Li, S. Dang, C. Yan, X. Gong, J. Wang, Y. Shi
Structure Of A Presenilin Family Intramembrane Aspartate Protease
Nature V. 493 56 2013
PubMed-ID: 23254940  |  Reference-DOI: 10.1038/NATURE11801

(-) Compounds

Molecule 1 - PUTATIVE UNCHARACTERIZED PROTEIN
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PET21B
    Gene: MEMAR_1924
    Mutation: YES
    Organism Scientific: METHANOCULLEUS MARISNIGRI JR1
    Organism Taxid: 368407
    Strain: ATCC 35101 / DSM 1498 / JR1

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4HYD)

(-) Sites  (0, 0)

(no "Site" information available for 4HYD)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4HYD)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Gly A:68 -Gly A:69
2Gly B:68 -Gly B:69
3Gly C:68 -Gly C:69
4Gly D:68 -Gly D:69

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4HYD)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4HYD)

(-) Exons   (0, 0)

(no "Exon" information available for 4HYD)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:246
                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4hyd A   4 RDWLPLLGMPLMLLFVQIIAIVLVMPMQAAGLVAPSSVANPLIFIGMLLAFTLVLLVLLRTGGRRFIAAFIGFALFMTFLYIFGALSLLALGPTTAAAAGTLIGAVAVTALLYLYPEWYVIDILGVLISAGVASIFGISLEPLPVLVLLVLLAVYDAISVYRTKHMITLAEGVGAFVMGMGDLIMPSILVVSSHVFLSAPTLGAMVGSLVGLAVLLYFVNKGNPQAGLPPLNGGAILGFLVGAALA 293
                                    13        23        33   ||   46        56        66        76        86        96       106       116       126       136       146       156       166       176  ||   218       228     ||247       257       267       277       287      
                                                            37|                                                                                                                                       179|                   234|                                                 
                                                             41                                                                                                                                        212                    244                                                 


Chain B from PDB  Type:PROTEIN  Length:246
                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhh.hhhhhh........hhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4hyd B   4 RDWLPLLGMPLMLLFVQIIAIVLVMPMQAAGLVAPSSVANPLIFIGMLLAFTLVLLVLLRTGGRRFIAAFIGFALFMTFLYIFGALSLLALGPTTAAAAGTLIGAVAVTALLYLYPEWYVIDILGVLISAGVASIFGISLEPLPVLVLLVLLAVYDAISVYRTKHMITLAEGVGAFVMGMGDLIMPSILVVSSHVFLSAPTLGAMVGSLVGLAVLLYFVNKGNPQAGLPPLNGGAILGFLVGAALA 293
                                    13        23        33   ||   46        56        66        76        86        96       106       116       126       136       146       156       166       176  ||   218       228     ||247       257       267       277       287      
                                                            37|                                                                                                                                       179|                   234|                                                 
                                                             41                                                                                                                                        212                    244                                                 


Chain C from PDB  Type:PROTEIN  Length:246
                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4hyd C   4 RDWLPLLGMPLMLLFVQIIAIVLVMPMQAAGLVAPSSVANPLIFIGMLLAFTLVLLVLLRTGGRRFIAAFIGFALFMTFLYIFGALSLLALGPTTAAAAGTLIGAVAVTALLYLYPEWYVIDILGVLISAGVASIFGISLEPLPVLVLLVLLAVYDAISVYRTKHMITLAEGVGAFVMGMGDLIMPSILVVSSHVFLSAPTLGAMVGSLVGLAVLLYFVNKGNPQAGLPPLNGGAILGFLVGAALA 293
                                    13        23        33   ||   46        56        66        76        86        96       106       116       126       136       146       156       166       176  ||   218       228     ||247       257       267       277       287      
                                                            37|                                                                                                                                       179|                   234|                                                 
                                                             41                                                                                                                                        212                    244                                                 


Chain D from PDB  Type:PROTEIN  Length:246
                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4hyd D   4 RDWLPLLGMPLMLLFVQIIAIVLVMPMQAAGLVAPSSVANPLIFIGMLLAFTLVLLVLLRTGGRRFIAAFIGFALFMTFLYIFGALSLLALGPTTAAAAGTLIGAVAVTALLYLYPEWYVIDILGVLISAGVASIFGISLEPLPVLVLLVLLAVYDAISVYRTKHMITLAEGVGAFVMGMGDLIMPSILVVSSHVFLSAPTLGAMVGSLVGLAVLLYFVNKGNPQAGLPPLNGGAILGFLVGAALA 293
                                    13        23        33   ||   46        56        66        76        86        96       106       116       126       136       146       156       166       176  ||   218       228     ||247       257       267       277       287      
                                                            37|                                                                                                                                       179|                   234|                                                 
                                                             41                                                                                                                                        212                    244
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4HYD)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4HYD)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4HYD)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)

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  Sites
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  Cis Peptide Bonds
    Gly A:68 - Gly A:69   [ RasMol ]  
    Gly B:68 - Gly B:69   [ RasMol ]  
    Gly C:68 - Gly C:69   [ RasMol ]  
    Gly D:68 - Gly D:69   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        A3CWV0_METMJ | A3CWV0: 4hyc 4hyg 4y6k

(-) Related Entries Specified in the PDB File

4hyc 4hyg