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(-) Description

Title :  STRUCTURE OF A PRESENILIN FAMILY INTRAMEMBRANE ASPARTATE PROTEASE IN C222 SPACE GROUP
 
Authors :  X. Li, S. Dang, C. Yan, J. Wang, Y. Shi
Date :  13 Nov 12  (Deposition) - 19 Dec 12  (Release) - 02 Jan 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.32
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (2x)
Biol. Unit 2:  C,D  (2x)
Keywords :  Protease, Membrane Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  X. Li, S. Dang, C. Yan, X. Gong, J. Wang, Y. Shi
Structure Of A Presenilin Family Intramembrane Aspartate Protease
Nature V. 493 56 2013
PubMed-ID: 23254940  |  Reference-DOI: 10.1038/NATURE11801

(-) Compounds

Molecule 1 - PUTATIVE UNCHARACTERIZED PROTEIN
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PET21B
    Gene: MEMAR_1924
    Mutation: YES
    Organism Scientific: METHANOCULLEUS MARISNIGRI JR1
    Organism Taxid: 368407
    Strain: ATCC 35101 / DSM 1498 / JR1

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (2x): AB  
Biological Unit 2 (2x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4HYG)

(-) Sites  (0, 0)

(no "Site" information available for 4HYG)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4HYG)

(-) Cis Peptide Bonds  (13, 13)

Asymmetric Unit
No.Residues
1Gly A:68 -Gly A:69
2Gly B:68 -Gly B:69
3Leu B:97 -Gly B:98
4Gly B:98 -Pro B:99
5Gly C:68 -Gly C:69
6Gly C:98 -Pro C:99
7Pro C:99 -Thr C:100
8Ala C:246 -Pro C:247
9Ala C:273 -Gly C:274
10Pro D:99 -Thr D:100
11Pro D:271 -Gln D:272
12Gln D:272 -Ala D:273
13Ala D:273 -Gly D:274

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4HYG)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4HYG)

(-) Exons   (0, 0)

(no "Exon" information available for 4HYG)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:246
                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4hyg A   4 RDWLPLLGMPLMLLFVQIIAIVLVMPMQAAGLVAPSSVANPLIFIGMLLAFTLVLLVLLRTGGRRFIAAFIGFALFMTFLYIFGALSLLALGPTTAAAAGTLIGAVAVTALLYLYPEWYVIDILGVLISAGVASIFGISLEPLPVLVLLVLLAVYDAISVYRTKHMITLAEGVGAFVMGMGDLIMPSILVVSSHVFLSAPTLGAMVGSLVGLAVLLYFVNKGNPQAGLPPLNGGAILGFLVGAALA 293
                                    13        23        33   ||   46        56        66        76        86        96       106       116       126       136       146       156       166       176  ||   218       228     ||247       257       267       277       287      
                                                            37|                                                                                                                                       179|                   234|                                                 
                                                             41                                                                                                                                        212                    244                                                 


Chain B from PDB  Type:PROTEIN  Length:247
                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hyg B   7 LPLLGMPLMLLFVQIIAIVLVMPMQAAGLVAPSSVANPLIFIGMLLAFTLVLLVLLRTGGRRFIAAFIGFALFMTFLYIFGALSLLALGPTTAAAAGTLIGAVAVTALLYLYPEWYVIDILGVLISAGVASIFGISLEPLPVLVLLVLLAVYDAISVYRTKHMITLAERGAFVMGMGDLIMPSILVVSSHVFAVLWTLSAPTLGAMVGSLVGLAVLLYFVNKGNPQAGLPPLNGGAILGFLVGAALA 293
                                    16        26        36||      49        59        69        79        89        99       109       119       129       139       149       159       169      |212       222       232 ||    246       256       266       276       286       
                                                         37|                                                                                                                                    176|                     234|                                                      
                                                          41                                                                                                                                     210                      239                                                      


Chain C from PDB  Type:PROTEIN  Length:238
                                                                                                                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hyg C   4 RDWLPLLGMPLMLLFVQIIAIVLVMPMQASSVANPLIFIGMLLAFTLVLLVLLRTGGRRFIAAFIGFALFMTFLYIFGALSLLALGPTTAAAAGTLIGAVAVTALLYLYPEWYVIDILGVLISAGVASIFGISLEPLPVLVLLVLLAVYDAISVYRTKHMITLAEGAFVMGMGDLIMPSILVVSSHVFVLWTLSAPTLGAMVGSLVGLAVLLYFVNQAGLPPLNGGAILGFLVGAALA 293
                                    13        23        42        52        62        72        82        92       102       112       122       132       142       152       162       172    || 216       226       241       251       261     ||275       285        
                                                       32|                                                                                                                                    177|                   234|                        267|                     
                                                        42                                                                                                                                     212                    240                         272                     


Chain D from PDB  Type:PROTEIN  Length:237
                                                                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhh.hhhhh...hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hyg D   6 WLPLLGMPLMLLFVQIIAIVLVMPMQAPSSVANPLIFIGMLLAFTLVLLVLLRTGGRRFIAAFIGFALFMTFLYIFGALSLLALGPTTAAAAGTLIGAVAVTALLYLYPEWYVIDILGVLISAGVASIFGISLEPLPVLVLLVLLAVYDAISVYRTKHMITLAEGVGAFVMGMGDLIMPSILVVSSHVFVSAPTLGAMVGSLVGLAVLLYFVNKGNPQAGLPPLNGGAILGFLVGAA 291
                                    15        25      ||43        53        63        73        83        93       103       113       123       133       143       153       163       173     ||215       225       235|      254       264       274       284       
                                                     32|                                                                                                                                       179|                    235|                                              
                                                      41                                                                                                                                        212                     245
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4HYG)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4HYG)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4HYG)

(-) Gene Ontology  (4, 4)

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  Cis Peptide Bonds
    Ala C:246 - Pro C:247   [ RasMol ]  
    Ala C:273 - Gly C:274   [ RasMol ]  
    Ala D:273 - Gly D:274   [ RasMol ]  
    Gln D:272 - Ala D:273   [ RasMol ]  
    Gly A:68 - Gly A:69   [ RasMol ]  
    Gly B:68 - Gly B:69   [ RasMol ]  
    Gly B:98 - Pro B:99   [ RasMol ]  
    Gly C:68 - Gly C:69   [ RasMol ]  
    Gly C:98 - Pro C:99   [ RasMol ]  
    Leu B:97 - Gly B:98   [ RasMol ]  
    Pro C:99 - Thr C:100   [ RasMol ]  
    Pro D:271 - Gln D:272   [ RasMol ]  
    Pro D:99 - Thr D:100   [ RasMol ]  
 
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        A3CWV0_METMJ | A3CWV0: 4hyc 4hyd 4y6k

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4hyc 4hyd