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(-) Description

Title :  STRUCTURE OF THE L100F MUTANT OF DEHALOPEROXIDASE-HEMOGLOBIN A FROM AMPHITRITE ORNATA WITH 4-BROMOPHENOL
 
Authors :  M. K. Thompson, A. Plummer, S. Franzen
Date :  31 Oct 12  (Deposition) - 01 May 13  (Release) - 01 May 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.12
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Globin, Oxygen Storage, Peroxidase, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Plummer, M. K. Thompson, S. Franzen
Role Of Polarity Of The Distal Pocket In The Control Of Inhibitor Binding In Dehaloperoxidase-Hemoglobin.
Biochemistry V. 52 2218 2013
PubMed-ID: 23480794  |  Reference-DOI: 10.1021/BI301509R

(-) Compounds

Molecule 1 - DEHALOPEROXIDASE A
    Chains: A, B
    EC Number: 1.11.1.7
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Mutation: YES
    Organism Scientific: AMPHITRITE ORNATA
    Organism Taxid: 129555

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 9)

Asymmetric Unit (4, 9)
No.NameCountTypeFull Name
1BML2Ligand/Ion4-BROMOPHENOL
2GOL1Ligand/IonGLYCEROL
3HEM2Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
4SO44Ligand/IonSULFATE ION
Biological Unit 1 (4, 6)
No.NameCountTypeFull Name
1BML1Ligand/Ion4-BROMOPHENOL
2GOL1Ligand/IonGLYCEROL
3HEM1Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
4SO43Ligand/IonSULFATE ION
Biological Unit 2 (3, 3)
No.NameCountTypeFull Name
1BML1Ligand/Ion4-BROMOPHENOL
2GOL-1Ligand/IonGLYCEROL
3HEM1Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
4SO41Ligand/IonSULFATE ION

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:24 , GLU A:31 , TYR A:34 , PHE A:35 , ASP A:54 , HIS A:55 , LYS A:58 , VAL A:59 , MET A:86 , GLN A:88 , HIS A:89 , LEU A:92 , ASN A:96 , PHE A:97 , BML A:206 , HOH A:357 , HOH A:390 , HOH A:464 , HOH A:512BINDING SITE FOR RESIDUE HEM A 201
2AC2SOFTWAREGLY A:1 , PHE A:2 , LYS A:3 , HOH A:304 , HOH A:387 , HOH A:482 , ARG B:32 , VAL B:39 , GLY B:40 , HOH B:303 , HOH B:457BINDING SITE FOR RESIDUE SO4 A 202
3AC3SOFTWAREARG A:32 , GLY A:40 , HOH A:429 , GLY B:1 , PHE B:2 , LYS B:3 , ASP B:116 , HOH B:308 , HOH B:335 , HOH B:367BINDING SITE FOR RESIDUE SO4 A 203
4AC4SOFTWARESER A:91 , ARG A:109 , GLN A:118 , HOH A:395 , HOH A:465BINDING SITE FOR RESIDUE SO4 A 204
5AC5SOFTWAREGLN A:4 , ASP A:5 , THR A:8 , GLN A:113 , SER A:114 , HOH A:401 , HOH B:334BINDING SITE FOR RESIDUE GOL A 205
6AC6SOFTWAREPHE A:21 , PHE A:35 , TYR A:38 , HIS A:55 , THR A:56 , VAL A:59 , PHE A:100 , HEM A:201 , HOH A:512BINDING SITE FOR RESIDUE BML A 206
7AC7SOFTWAREGLU B:31 , TYR B:34 , PHE B:35 , HIS B:55 , LYS B:58 , VAL B:59 , MET B:63 , MET B:86 , GLN B:88 , HIS B:89 , LEU B:92 , ASN B:96 , PHE B:97 , LEU B:127 , BML B:203 , HOH B:353 , HOH B:446 , HOH B:494BINDING SITE FOR RESIDUE HEM B 201
8AC8SOFTWAREASN B:37 , TYR B:38 , VAL B:39 , HOH B:365 , HOH B:380 , HOH B:430 , HOH B:470BINDING SITE FOR RESIDUE SO4 B 202
9AC9SOFTWAREPHE B:21 , PHE B:35 , HIS B:55 , THR B:56 , VAL B:59 , PHE B:100 , HEM B:201 , HOH B:429 , HOH B:494BINDING SITE FOR RESIDUE BML B 203

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4HSX)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4HSX)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4HSX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4HSX)

(-) Exons   (0, 0)

(no "Exon" information available for 4HSX)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:137
                                                                                                                                                                         
               SCOP domains d4hsxa_ A: Dehaloperoxidase                                                                                                               SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hsx A   1 GFKQDIATIRGDLRTYAQDIFLAFLNKYPDERRYFKNYVGKSDQELKSMAKFGDHTEKVFNLMMEVADRATDCVPLASDANTLVQMKQHSSLTTGNFEKFFVALVEYMRASGQSFDSQSWDRFGKNLVSALSSAGMK 137
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       


Chain B from PDB  Type:PROTEIN  Length:137
                                                                                                                                                                         
               SCOP domains d4hsxb_ B: Dehaloperoxidase                                                                                                               SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhh..hhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hsx B   1 GFKQDIATIRGDLRTYAQDIFLAFLNKYPDERRYFKNYVGKSDQELKSMAKFGDHTEKVFNLMMEVADRATDCVPLASDANTLVQMKQHSSLTTGNFEKFFVALVEYMRASGQSFDSQSWDRFGKNLVSALSSAGMK 137
                                    10        20        30        40        50        60        70        80        90       100       110       120       130
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4HSX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4HSX)

(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)

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        Q9NAV8_9ANNE | Q9NAV8: 1ew6 1ewa 2qfk 2qfn 3dr9 3k3u 3kun 3kuo 3lb1 3lb2 3lb3 3lb4 3mou 3mym 3myn 3o7n 3oj1 3ok5 3ord 4dwt 4dwu 4fh6 4fh7 4gzg 4hsw 4ilz 4jac 4jyq 4kjt 4kmv 4kmw 4kn3

(-) Related Entries Specified in the PDB File

4hsw