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(-) Description

Title :  STRUCTURE OF DHP A IN COMPLEX WITH 2,4,6-TRIBROMOPHENOL IN 20% METHANOL
 
Authors :  V. S. De Serrano, S. Franzen
Date :  05 Jun 12  (Deposition) - 27 Mar 13  (Release) - 24 Apr 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.74
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Peroxidase, Globin, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Zhao, V. De Serrano, J. Zhao, P. Le, S. Franzen
Structural And Kinetic Study Of An Internal Substrate Binding Site In Dehaloperoxidase-Hemoglobin A From Amphitrite Ornata.
Biochemistry V. 52 2427 2013
PubMed-ID: 23480178  |  Reference-DOI: 10.1021/BI301307F

(-) Compounds

Molecule 1 - DEHALOPEROXIDASE A
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET16B
    Expression System Strain: ROSETTA (DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: DHPA
    Organism Scientific: AMPHITRITE ORNATA
    Organism Taxid: 129555

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 16)

Asymmetric/Biological Unit (5, 16)
No.NameCountTypeFull Name
1HEM2Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
2MOH4Ligand/IonMETHANOL
3OXY1Ligand/IonOXYGEN MOLECULE
4SO48Ligand/IonSULFATE ION
5TBP1Ligand/Ion2,4,6-TRIBROMOPHENOL

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU A:31 , TYR A:34 , PHE A:35 , HIS A:55 , LYS A:58 , VAL A:59 , LEU A:62 , MET A:63 , MET A:86 , GLN A:88 , HIS A:89 , LEU A:92 , ASN A:96 , PHE A:97 , LEU A:100 , TBP A:202 , OXY A:203 , HOH A:409BINDING SITE FOR RESIDUE HEM A 201
02AC2SOFTWAREILE A:20 , PHE A:21 , PHE A:24 , PHE A:35 , VAL A:59 , PHE A:60 , MET A:63 , LEU A:100 , HEM A:201 , OXY A:203BINDING SITE FOR RESIDUE TBP A 202
03AC3SOFTWAREPHE A:21 , HIS A:55 , VAL A:59 , HEM A:201 , TBP A:202BINDING SITE FOR RESIDUE OXY A 203
04AC4SOFTWAREARG A:32 , VAL A:39 , GLY A:40 , HOH A:369 , GLY B:1 , PHE B:2 , LYS B:3 , ASP B:116 , HOH B:314 , HOH B:323 , HOH B:356BINDING SITE FOR RESIDUE SO4 A 204
05AC5SOFTWAREARG A:33 , TYR A:34 , GLN A:118 , HOH A:354 , LYS B:27 , TYR B:28 , PRO B:29 , ASP B:30 , HOH B:309 , HOH B:380BINDING SITE FOR RESIDUE SO4 A 205
06AC6SOFTWARELYS A:99 , HOH A:335 , HOH A:368 , GLU B:31 , ARG B:33 , TYR B:34 , ASN B:96 , LYS B:99 , HOH B:401BINDING SITE FOR RESIDUE SO4 A 206
07AC7SOFTWARELYS A:47 , HOH A:407BINDING SITE FOR RESIDUE SO4 A 207
08AC8SOFTWAREGLY A:1 , PHE A:2 , LYS A:3 , HOH A:311 , HOH A:332 , HOH A:337 , HOH A:418 , HOH A:419 , ARG B:32 , VAL B:39 , GLY B:40BINDING SITE FOR RESIDUE SO4 A 208
09AC9SOFTWAREARG A:109 , SER A:117 , GLN A:118 , HOH A:353 , HOH A:354BINDING SITE FOR RESIDUE SO4 A 210
10BC1SOFTWAREGLU B:31 , TYR B:34 , PHE B:35 , LYS B:36 , TYR B:38 , LYS B:51 , HIS B:55 , LYS B:58 , VAL B:59 , MET B:63 , MET B:86 , GLN B:88 , HIS B:89 , LEU B:92 , ASN B:96 , PHE B:97 , LEU B:127 , HOH B:367BINDING SITE FOR RESIDUE HEM B 201
11BC2SOFTWAREMET B:86 , LYS B:87 , HOH B:316BINDING SITE FOR RESIDUE SO4 B 202
12BC3SOFTWARELYS B:47 , ASN B:81 , THR B:82 , HOH B:318 , HOH B:402BINDING SITE FOR RESIDUE SO4 B 203

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4FH7)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4FH7)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4FH7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4FH7)

(-) Exons   (0, 0)

(no "Exon" information available for 4FH7)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:137
                                                                                                                                                                         
               SCOP domains d4fh7a_ A: Dehaloperoxidase                                                                                                               SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fh7 A   1 GFKQDIATIRGDLRTYAQDIFLAFLNKYPDERRYFKNYVGKSDQELKSMAKFGDHTEKVFNLMMEVADRATDCVPLASDANTLVQMKQHSSLTTGNFEKLFVALVEYMRASGQSFDSQSWDRFGKNLVSALSSAGMK 137
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       


Chain B from PDB  Type:PROTEIN  Length:137
                                                                                                                                                                         
               SCOP domains d4fh7b_ B: Dehaloperoxidase                                                                                                               SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhh..hhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fh7 B   1 GFKQDIATIRGDLRTYAQDIFLAFLNKYPDERRYFKNYVGKSDQELKSMAKFGDHTEKVFNLMMEVADRATDCVPLASDANTLVQMKQHSSLTTGNFEKLFVALVEYMRASGQSFDSQSWDRFGKNLVSALSSAGMK 137
                                    10        20        30        40        50        60        70        80        90       100       110       120       130
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4FH7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4FH7)

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q9NAV8_9ANNE | Q9NAV8: 1ew6 1ewa 2qfk 2qfn 3dr9 3k3u 3kun 3kuo 3lb1 3lb2 3lb3 3lb4 3mou 3mym 3myn 3o7n 3oj1 3ok5 3ord 4dwt 4dwu 4fh6 4gzg 4hsw 4hsx 4ilz 4jac 4jyq 4kjt 4kmv 4kmw 4kn3

(-) Related Entries Specified in the PDB File

4fh6